RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA399711" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA399711 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32935016 32935016 PRJNA399711_S_NODE_78833_length_169_cov_1.454545_g78691_i0 PRJNA399711 78833 169 1.454545 2.45818105 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 55.1 6.13e-7   NR KAJ8028094.1 206669 g78691 i0 47.1 1.77514792899408 51 27 90.5 0 1 153 475 525 KAJ8028094.1 hypothetical protein HOLleu_30231 [Holothuria leucospilota] diamond 300 55.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
33094985 33094985 PRJNA399711_S_NODE_78846_length_169_cov_1.424242_g78704_i0 PRJNA399711 78846 169 1.424242 2.40696898 Metazoa 33208 Echinodermata other_Eukaryota 56.6 1.7e-7   NR XP_054773947.2 7653 g78704 i0 84.4 44.3431952662722 32 5 56.8 0 24 119 372 403 XP_054773947.2 ankyrin repeat domain-containing protein 17-like isoform X2 [Lytechinus pictus] diamond 7494 57 0.992982456140351 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
33105562 33105562 PRJNA399711_S_NODE_47214_length_203_cov_4.277108_g47072_i0 PRJNA399711 47214 203 4.277108 8.68252924 Anneissia japonica 1529436 Echinodermata other_Eukaryota 49.3 1.05e-4   NR XP_033099741.1 1529436 g47072 i0 45.9 0.901477832512315 61 31 88.7 2 182 3 228 287 XP_033099741.1 uncharacterized protein LOC117103306, partial [Anneissia japonica] diamond 183 49.3 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;