RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA399711" and tax_phylum = "Cossaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Cossaviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA399711 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26108155 26108155 PRJNA399711_S_NODE_4677_length_437_cov_6.230000_g4539_i0 PRJNA399711 4677 437 6.23 27.2251 Syrmaticus ellioti parvo-like hybrid virus 2794537 Viruses Viruses 201 3.5799999999999995e-61   NR QTE03955.1 2794537 g4539 i0 73.8 0.967963386727689 141 31 92.7 2 407 3 1 141 QTE03955.1 MAG: capsid protein, partial [Syrmaticus ellioti parvo-like hybrid virus] diamond 423 201 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Syrmaticus ellioti parvo-like hybrid virus
33111911 33111911 PRJNA399711_S_NODE_94214_length_158_cov_4.000000_g94072_i0 PRJNA399711 94214 158 4 6.32 root 1 Root_unresolved Root_unresolved 84.7 6.82e-19   NR CAA10165.1 1891767 g94072 i0 86.3 3.87341772151899 51 7 96.8 0 154 2 86 136 CAA10165.1 large tumor antigen [Betapolyomavirus macacae] diamond 612 84.7 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;