RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA399711" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA399711 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26517846 26517846 PRJNA399711_S_NODE_88160_length_162_cov_2.752000_g88018_i0 PRJNA399711 88160 162 2.752 4.45824 Fusobacterium massiliense 1852365 Bacteria Bacteria 108 2.7300000000000003e-27   NR WP_074017040.1 1852365 g88018 i0 100 1 54 0 100 0 1 162 194 247 WP_074017040.1 amino acid ABC transporter ATP-binding protein [Fusobacterium massiliense] diamond 162 108 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
33162954 33162954 PRJNA399711_S_NODE_105760_length_152_cov_1.643478_g105618_i0 PRJNA399711 105760 152 1.643478 2.49808656 Fusobacterium 848 Bacteria Bacteria 47.4 2.49e-4   NR WP_249527454.1 851 g105618 i0 95.5 3.45394736842105 22 1 43.4 0 152 87 392 413 WP_249527454.1 beta-ketoacyl-ACP synthase II [Fusobacterium nucleatum] diamond 525 47.8 0.99163179916318 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
33162979 33162979 PRJNA399711_S_NODE_21864_length_267_cov_2.573913_g21722_i0 PRJNA399711 21864 267 2.573913 6.87234771 Fusobacterium 848 Bacteria Bacteria 115 2.94e-31   NR WP_208895359.1 76857 g21722 i0 74.7 2.65168539325843 79 20 88.8 0 30 266 1 79 WP_208895359.1 hypothetical protein [Fusobacterium polymorphum] diamond 708 116 0.991379310344828 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;