RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA399133" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA399133 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29934343 29934343 PRJNA399133_P_NODE_5131_length_229_cov_1.881443_g5043_i0 PRJNA399133 5131 229 1.881443 4.30850447 Pseudomonadati 3379134 Bacteria Bacteria 48.9 2.15e-4   NR OGR15812.1 1797913 g5043 i0 43.4 1.96506550218341 76 41 99.6 1 2 229 917 990 OGR15812.1 MAG: hypothetical protein A2X81_08225 [Desulfobacterales bacterium GWB2_56_26] diamond 450 48.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium GWB2_56_26
30991780 30991780 PRJNA399133_P_NODE_5214_length_229_cov_1.793814_g5126_i0 PRJNA399133 5214 229 1.793814 4.10783406 Desulfosalsimonas propionicica 332175 Bacteria Bacteria 53.9 3.47e-6   NR WP_220128375.1 332175 g5126 i0 100 0.62882096069869 24 0 31.4 0 74 3 718 741 WP_220128375.1 molybdopterin-dependent oxidoreductase [Desulfosalsimonas propionicica] diamond 144 53.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosalsimonadaceae Desulfosalsimonas Desulfosalsimonas propionicica
32635886 32635886 PRJNA399133_P_NODE_340_length_917_cov_2.975057_g287_i0 PRJNA399133 340 917 2.975057 27.28127269 Desulfobacterales bacterium 2044940 Bacteria Bacteria 181 9.49e-53   NR MDH3876401.1 2044940 g287 i0 57.8 0.588876772082879 180 70 58.9 3 723 184 11 184 MDH3876401.1 ERF family protein [Desulfobacterales bacterium] diamond 540 181 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;