RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA399133" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA399133 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30265272 30265272 PRJNA399133_P_NODE_5532_length_225_cov_2.242105_g5444_i0 PRJNA399133 5532 225 2.242105 5.04473625 Tenericutes bacterium ADurb.Bin239 1852920 Bacteria Bacteria 68.6 6.57e-13   NR OQA77035.1 1852920 g5444 i0 54.2 1.69333333333333 59 27 78.7 0 202 26 48 106 OQA77035.1 MAG: hypothetical protein BWY30_01179 [Tenericutes bacterium ADurb.Bin239] diamond 381 68.6 1 Bacteria   Bacillati Mycoplasmatota         Tenericutes bacterium ADurb.Bin239
31497676 31497676 PRJNA399133_P_NODE_5556_length_225_cov_1.263158_g5468_i0 PRJNA399133 5556 225 1.263158 2.8421055 Mycoplasmopsis arginini 2094 Bacteria Bacteria 47 5.27e-4   NR WP_282459244.1 2094 g5468 i0 31.7 1.09333333333333 82 48 100 2 1 225 90 170 WP_282459244.1 hypothetical protein [Mycoplasmopsis arginini] diamond 246 47 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;