RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA399133" and tax_kingdom = "Viridiplantae"

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tax_phylum 2

tax_clade 2

tax_superkingdom 1

tax_kingdom 1

  • Viridiplantae · 4 ✖

bioproject 1

  • PRJNA399133 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26726838 26726838 PRJNA399133_P_NODE_6201_length_211_cov_1.795455_g6113_i0 PRJNA399133 6201 211 1.795455 3.78841005 Urochloa decumbens 240449 Plants Plants 41.6 0.0105   NR CAL4931470.1 240449 g6113 i0 38.1 0.895734597156398 63 38 89.6 1 191 3 4 65 CAL4931470.1 unnamed protein product [Urochloa decumbens] diamond 189 41.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Urochloa Urochloa decumbens
28780562 28780562 PRJNA399133_P_NODE_10627_length_162_cov_1.259843_g10539_i0 PRJNA399133 10627 162 1.259843 2.04094566 Ostreococcus tauri 70448 Plants Plants 74.7 4.04e-14   NR XP_022840204.1 70448 g10539 i0 65.4 3.85185185185185 52 18 96.3 0 1 156 262 313 XP_022840204.1 G-protein beta WD-40 repeat [Ostreococcus tauri] diamond 624 74.7 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Ostreococcus Ostreococcus tauri
31971931 31971931 PRJNA399133_P_NODE_4098_length_249_cov_2.584112_g4010_i0 PRJNA399133 4098 249 2.584112 6.43443888 Hibiscus sabdariffa 183260 Plants Plants 44.7 0.0076   NR KAK8528057.1 183260 g4010 i0 52.1 0.578313253012048 48 23 57.8 0 249 106 117 164 KAK8528057.1 hypothetical protein V6N13_100804, partial [Hibiscus sabdariffa] diamond 144 44.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Hibiscus Hibiscus sabdariffa
32193544 32193544 PRJNA399133_P_NODE_11258_length_158_cov_0.878049_g11170_i0 PRJNA399133 11258 158 0.878049 1.38731742 Coccomyxa viridis 1274662 Plants Plants 77.8 5.08e-15   NR CAL5219331.1 1274662 g11170 i0 71.2 1.9746835443038 52 15 98.7 0 156 1 348 399 CAL5219331.1 g1143 [Coccomyxa viridis] diamond 312 77.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;