RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA397736" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA397736 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26712025 26712025 PRJNA397736_S_NODE_1261_length_249_cov_5.981818_g1225_i0 PRJNA397736 1261 249 5.981818 14.89472682 root 1 Root_unresolved Root_unresolved 165 1.12e-50   NR MDK0657390.1 1502 g1225 i0 98.8 77.0602409638554 82 1 98.8 0 2 247 27 108 MDK0657390.1 30S ribosomal protein S8 [Clostridium perfringens] diamond 19188 166 0.993975903614458 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens
26790667 26790667 PRJNA397736_S_NODE_441_length_444_cov_3.879518_g406_i0 PRJNA397736 441 444 3.879518 17.22505992 Eubacterium sp. 142586 Bacteria Bacteria 64.3 7.23e-9   NR MDE6469480.1 142586 g406 i0 31.6 1.75 133 73 83.1 4 56 424 206 330 MDE6469480.1 glycoside hydrolase family 18 protein [Eubacterium sp.] diamond 777 64.3 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Eubacteriaceae Eubacterium Eubacterium sp.
28355322 28355322 PRJNA397736_S_NODE_2466_length_170_cov_4.127660_g2430_i0 PRJNA397736 2466 170 4.12766 7.017022 root 1 Root_unresolved Root_unresolved 109 1.9e-29   NR MRB67503.1 1428 g2430 i0 98.2 238.147058823529 56 1 98.8 0 3 170 55 110 MRB67503.1 30S ribosomal protein S11 [Bacillus thuringiensis] diamond 40485 110 0.990909090909091 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis
31781974 31781974 PRJNA397736_S_NODE_2137_length_185_cov_6.576923_g2101_i0 PRJNA397736 2137 185 6.576923 12.16730755 Streptococcus pneumoniae 1313 Bacteria Bacteria 89.4 1.41e-21   NR MDG7606462.1 1313 g2101 i0 97.5 0.648648648648649 40 1 64.9 0 185 66 1 40 MDG7606462.1 hypothetical protein [Streptococcus pneumoniae] diamond 120 89.4 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;