RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA397736" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA397736 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18263782 18263782 PRJNA397736_S_NODE_155_length_739_cov_27.492958_g140_i0 PRJNA397736 155 739 27.492958 203.17295962 Penaeus chinensis 139456 Arthropoda Arthropoda 95.1 2.87e-18   NR XP_047497450.1 139456 g140 i0 41.4 2.77266576454668 157 64 52.4 3 739 353 430 586 XP_047497450.1 heat shock 70 kDa protein cognate 4-like [Penaeus chinensis] diamond 2049 95.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Penaeidae Penaeus Penaeus chinensis
27755777 27755777 PRJNA397736_S_NODE_3064_length_150_cov_4.223140_g3028_i0 PRJNA397736 3064 150 4.22314 6.33471 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 41.2 0.0363   NR XP_071512935.1 150431 g3028 i0 39.6 1.86 48 29 96 0 6 149 131 178 XP_071512935.1 glycylpeptide N-tetradecanoyltransferase 2 isoform X4 [Panulirus ornatus] diamond 279 41.2 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Palinuridae Panulirus Panulirus ornatus
32035263 32035263 PRJNA397736_S_NODE_2718_length_161_cov_2.113636_g2682_i0 PRJNA397736 2718 161 2.113636 3.40295396 Polypedilum vanderplanki 319348 Arthropoda Arthropoda 45.1 0.00118   NR KAG5669625.1 319348 g2682 i0 40 1.02484472049689 55 31 98.8 1 161 3 27 81 KAG5669625.1 hypothetical protein PVAND_017510 [Polypedilum vanderplanki] diamond 165 45.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Chironomidae Polypedilum Polypedilum vanderplanki

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;