RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA397733" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA397733 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28228856 28228856 PRJNA397733_S_NODE_2306_length_411_cov_9.217277_g2218_i0 PRJNA397733 2306 411 9.217277 37.88300847 Metazoa 33208 Mollusca Mollusca 184 4.29e-51   NR CAG2190629.1 6550 g2218 i0 99.3 319.613138686131 136 1 99.3 0 3 410 570 705 CAG2190629.1 SAP155 [Mytilus edulis] diamond 131361 185 0.994594594594595 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis
30928566 30928566 PRJNA397733_S_NODE_4194_length_298_cov_4.873606_g4106_i0 PRJNA397733 4194 298 4.873606 14.52334588 Elysia marginata 1093978 Mollusca Mollusca 46.6 0.00291   NR GFR65512.1 1093978 g4106 i0 61.1 0.674496644295302 36 14 36.2 0 84 191 12 47 GFR65512.1 kelch repeat and BTB domain-containing protein 12 [Elysia marginata] diamond 201 46.6 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Plakobranchidae Elysia Elysia marginata
32003672 32003672 PRJNA397733_S_NODE_5398_length_260_cov_6.229437_g5310_i0 PRJNA397733 5398 260 6.229437 16.1965362 Mizuhopecten yessoensis 6573 Mollusca Mollusca 180 6.670000000000002e-51   NR ASU91375.1 6573 g5310 i0 97.7 226.234615384615 86 2 99.2 0 259 2 301 386 ASU91375.1 heat shock protein 90 [Mizuhopecten yessoensis] diamond 58821 181 0.994475138121547 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
32730626 32730626 PRJNA397733_S_NODE_3380_length_335_cov_2.941176_g3292_i0 PRJNA397733 3380 335 2.941176 9.8529396 Solemya velum 13268 Mollusca Mollusca 61.2 1.82e-8   NR KAL5015350.1 13268 g3292 i0 90 1.88059701492537 30 3 26.9 0 163 252 218 247 KAL5015350.1 hypothetical protein ScPMuIL_009620 [Solemya velum] diamond 630 61.2 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Solemyida Solemyidae Solemya Solemya velum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;