RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA397733" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA397733 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28401809 28401809 PRJNA397733_S_NODE_4546_length_286_cov_4.097276_g4458_i0 PRJNA397733 4546 286 4.097276 11.71820936 Streptomyces sp. Act143 2200760 Bacteria Bacteria 45.8 0.00326   NR WP_146238297.1 2200760 g4458 i0 47.9 1.00699300699301 48 24 49.3 1 209 69 112 159 WP_146238297.1 VanZ family protein [Streptomyces sp. Act143] diamond 288 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Act143
28671259 28671259 PRJNA397733_S_NODE_11607_length_178_cov_2.463087_g11519_i0 PRJNA397733 11607 178 2.463087 4.38429486 Rhodococcus 1827 Bacteria Bacteria 43.5 0.00141   NR WP_172682059.1 1833 g11519 i0 48.4 1.56741573033708 31 16 52.2 0 34 126 6 36 WP_172682059.1 hypothetical protein [Rhodococcus erythropolis] diamond 279 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus erythropolis
32003669 32003669 PRJNA397733_S_NODE_10058_length_190_cov_2.919255_g9970_i0 PRJNA397733 10058 190 2.919255 5.5465845 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 42.4 0.00797   NR MEX1005472.1 2080302 g9970 i0 48.6 0.552631578947368 35 18 55.3 0 1 105 72 106 MEX1005472.1 hypothetical protein [Acidimicrobiia bacterium] diamond 105 42.4 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
32130358 32130358 PRJNA397733_S_NODE_558_length_1172_cov_6.906387_g526_i0 PRJNA397733 558 1172 6.906387 80.94285564 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 49.3 0.0236   NR HEX6595847.1 2201156 g526 i0 54.4 0.145904436860068 57 23 14.6 2 528 358 29 82 HEX6595847.1 YncE family protein [Acidimicrobiales bacterium] diamond 171 49.3 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
32825029 32825029 PRJNA397733_S_NODE_14260_length_162_cov_2.691729_g14172_i0 PRJNA397733 14260 162 2.691729 4.36060098 Rhodococcus sp. BS-15 1304954 Bacteria Bacteria 41.6 0.0208   NR WP_145977668.1 1304954 g14172 i0 45 0.740740740740741 40 21 74.1 1 157 38 28 66 WP_145977668.1 prepilin peptidase, partial [Rhodococcus sp. BS-15] diamond 120 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. BS-15

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;