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contig_metadata

28 rows where analysis = "diamond", bioproject = "PRJNA397065" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 28 ✖

tax_kingdom 1

bioproject 1

  • PRJNA397065 · 28 ✖

analysis 1

  • diamond · 28 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9340250 9340250 PRJNA397065_S_NODE_7168_length_338_cov_2.983819_g6918_i0 PRJNA397065 7168 338 2.983819 10.08530822 Propionivibrio sp. 2212460 Bacteria Bacteria 214 2.4699999999999996e-66   NR WP_305073382.1 2212460 g6918 i0 97.3 0.994082840236686 112 3 99.4 0 1 336 23 134 WP_305073382.1 IS5 family transposase [Propionivibrio sp.] diamond 336 214 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Rhodocyclales Rhodocyclaceae Propionivibrio Propionivibrio sp.
13165758 13165758 PRJNA397065_S_NODE_16911_length_171_cov_1.323944_g16661_i0 PRJNA397065 16911 171 1.323944 2.26394424 Cupriavidus sp. UYPR2.512 1080187 Bacteria Bacteria 111 7.56e-27   NR WP_018315012.1 1080187 g16661 i0 94.6 0.982456140350877 56 3 98.2 0 169 2 418 473 WP_018315012.1 hypothetical protein [Cupriavidus sp. UYPR2.512] diamond 168 111 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. UYPR2.512
26632220 26632220 PRJNA397065_S_NODE_16401_length_175_cov_1.609589_g16151_i0 PRJNA397065 16401 175 1.609589 2.81678075 Trinickia fusca 2419777 Bacteria Bacteria 97.8 3e-24   NR WP_121275632.1 2419777 g16151 i0 77.6 2.98285714285714 58 13 99.4 0 1 174 73 130 WP_121275632.1 DUF29 domain-containing protein [Trinickia fusca] diamond 522 97.8 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Trinickia Trinickia fusca
26854104 26854104 PRJNA397065_S_NODE_14601_length_191_cov_4.055556_g14351_i0 PRJNA397065 14601 191 4.055556 7.74611196 Burkholderiaceae 119060 Bacteria Bacteria 117 5.69e-33   NR WP_029308548.1 119060 g14351 i0 100 0.910994764397906 58 0 91.1 0 189 16 17 74 WP_029308548.1 MULTISPECIES: hypothetical protein [Burkholderiaceae] diamond 174 117 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae    
27043761 27043761 PRJNA397065_S_NODE_18842_length_157_cov_1.054688_g18592_i0 PRJNA397065 18842 157 1.054688 1.65586016 Cupriavidus sp. UYPR2.512 1080187 Bacteria Bacteria 71.2 5.61e-13   NR WP_018314988.1 1080187 g18592 i0 67.3 0.993630573248408 52 17 99.4 0 2 157 33 84 WP_018314988.1 hypothetical protein [Cupriavidus sp. UYPR2.512] diamond 156 71.2 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. UYPR2.512
27233437 27233437 PRJNA397065_S_NODE_18903_length_156_cov_2.811024_g18653_i0 PRJNA397065 18903 156 2.811024 4.38519744 Cupriavidus sp. UYPR2.512 1080187 Bacteria Bacteria 85.1 5.35e-18   NR WP_018315006.1 1080187 g18653 i0 82.2 0.865384615384615 45 8 86.5 0 2 136 283 327 WP_018315006.1 N4-gp56 family major capsid protein [Cupriavidus sp. UYPR2.512] diamond 135 85.1 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. UYPR2.512
27265099 27265099 PRJNA397065_S_NODE_9023_length_281_cov_1.646825_g8773_i0 PRJNA397065 9023 281 1.646825 4.62757825 Burkholderiaceae 119060 Bacteria Bacteria 140 9.3e-39   NR WP_029308547.1 119060 g8773 i0 72.8 0.98220640569395 92 25 98.2 0 277 2 68 159 WP_029308547.1 MULTISPECIES: plasmid replication initiator TrfA [Burkholderiaceae] diamond 276 140 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae    
27517771 27517771 PRJNA397065_S_NODE_14283_length_195_cov_1.698795_g14033_i0 PRJNA397065 14283 195 1.698795 3.31265025 Cupriavidus pinatubonensis 248026 Bacteria Bacteria 120 2.07e-33   NR WP_224001231.1 248026 g14033 i0 100 0.984615384615385 64 0 98.5 0 3 194 70 133 WP_224001231.1 hypothetical protein [Cupriavidus pinatubonensis] diamond 192 120 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus pinatubonensis
27534515 27534515 PRJNA397065_S_NODE_18643_length_158_cov_2.178295_g18393_i0 PRJNA397065 18643 158 2.178295 3.4417061 root 1 Root_unresolved Root_unresolved 106 5.539999999999999e-28   NR WP_274598201.1 470 g18393 i0 100 7.89873417721519 52 0 98.7 0 1 156 15 66 WP_274598201.1 3'-5' exonuclease, partial [Acinetobacter baumannii] diamond 1248 106 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii
27802041 27802041 PRJNA397065_S_NODE_15904_length_179_cov_2.193333_g15654_i0 PRJNA397065 15904 179 2.193333 3.92606607 Cupriavidus metallidurans 119219 Bacteria Bacteria 49.7 5.54e-5   NR WP_029309782.1 119219 g15654 i0 62.2 0.620111731843575 37 14 62 0 68 178 1 37 WP_029309782.1 hypothetical protein [Cupriavidus metallidurans] diamond 111 49.7 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans
27818846 27818846 PRJNA397065_S_NODE_17544_length_166_cov_1.715328_g17294_i0 PRJNA397065 17544 166 1.715328 2.84744448 Gammaproteobacteria 1236 Bacteria Bacteria 117 2.4199999999999998e-32   NR WP_277922997.1 470 g17294 i0 100 1.95180722891566 54 0 97.6 0 3 164 58 111 WP_277922997.1 DNA polymerase domain-containing protein, partial [Acinetobacter baumannii] diamond 324 117 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii
27991504 27991504 PRJNA397065_S_NODE_17985_length_162_cov_3.526316_g17735_i0 PRJNA397065 17985 162 3.526316 5.71263192 Cupriavidus sp. UYPR2.512 1080187 Bacteria Bacteria 95.5 7.34e-22   NR WP_018315006.1 1080187 g17735 i0 79.2 0.981481481481482 53 11 98.1 0 161 3 196 248 WP_018315006.1 N4-gp56 family major capsid protein [Cupriavidus sp. UYPR2.512] diamond 159 95.5 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. UYPR2.512
28212127 28212127 PRJNA397065_S_NODE_18206_length_161_cov_1.780303_g17956_i0 PRJNA397065 18206 161 1.780303 2.86628783 Cupriavidus metallidurans 119219 Bacteria Bacteria 88.6 1.87e-21   NR WP_375199118.1 119219 g17956 i0 94.3 0.987577639751553 53 3 98.8 0 160 2 3 55 WP_375199118.1 hypothetical protein [Cupriavidus metallidurans] diamond 159 88.6 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans
28528308 28528308 PRJNA397065_S_NODE_11387_length_234_cov_1.146341_g11137_i0 PRJNA397065 11387 234 1.146341 2.68243794 Burkholderiales bacterium 1891238 Bacteria Bacteria 118 3.25e-29   NR MEO8296338.1 1891238 g11137 i0 75.3 0.987179487179487 77 19 98.7 0 232 2 54 130 MEO8296338.1 hypothetical protein [Burkholderiales bacterium] diamond 231 118 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales     Burkholderiales bacterium
28875418 28875418 PRJNA397065_S_NODE_10908_length_241_cov_9.212264_g10658_i0 PRJNA397065 10908 241 9.212264 22.20155624 Cupriavidus metallidurans 119219 Bacteria Bacteria 101 3.74e-25   NR WP_060784391.1 119219 g10658 i0 100 0.622406639004149 50 0 62.2 0 6 155 105 154 WP_060784391.1 pilin [Cupriavidus metallidurans] diamond 150 101 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans
29033547 29033547 PRJNA397065_S_NODE_15608_length_181_cov_6.348684_g15358_i0 PRJNA397065 15608 181 6.348684 11.49111804 Cupriavidus sp. SIMBA_ 1873897 Bacteria Bacteria 94.7 1.32e-23   NR WP_410747677.1 3085766 g15358 i0 90.6 0.878453038674033 53 5 87.8 0 1 159 43 95 WP_410747677.1 hypothetical protein [Cupriavidus sp. SIMBA_020] diamond 159 94.7 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. SIMBA_020
29349130 29349130 PRJNA397065_S_NODE_15709_length_181_cov_1.539474_g15459_i0 PRJNA397065 15709 181 1.539474 2.78644794 Cupriavidus sp. UYPR2.512 1080187 Bacteria Bacteria 102 6.670000000000001e-26   NR WP_018314989.1 1080187 g15459 i0 81.7 0.994475138121547 60 11 99.4 0 2 181 41 100 WP_018314989.1 hypothetical protein [Cupriavidus sp. UYPR2.512] diamond 180 102 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. UYPR2.512
29538406 29538406 PRJNA397065_S_NODE_13030_length_210_cov_2.303867_g12780_i0 PRJNA397065 13030 210 2.303867 4.8381207 Cupriavidus sp. UYPR2.512 1080187 Bacteria Bacteria 51.2 4.93e-6   NR WP_018315009.1 1080187 g12780 i0 40.6 0.985714285714286 69 37 94.3 3 3 200 30 97 WP_018315009.1 hypothetical protein [Cupriavidus sp. UYPR2.512] diamond 207 51.2 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. UYPR2.512
29949064 29949064 PRJNA397065_S_NODE_18531_length_159_cov_1.446154_g18281_i0 PRJNA397065 18531 159 1.446154 2.29938486 Cupriavidus metallidurans 119219 Bacteria Bacteria 49.3 5.93e-5   NR WP_051723089.1 119219 g18281 i0 45.3 1 53 29 100 0 1 159 25 77 WP_051723089.1 hypothetical protein [Cupriavidus metallidurans] diamond 159 49.3 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans
30423283 30423283 PRJNA397065_S_NODE_19633_length_152_cov_1.471545_g19383_i0 PRJNA397065 19633 152 1.471545 2.2367484 Cupriavidus sp. UYPR2.512 1080187 Bacteria Bacteria 84.3 2.33e-17   NR WP_081624057.1 1080187 g19383 i0 80 0.986842105263158 50 10 98.7 0 1 150 3159 3208 WP_081624057.1 PLxRFG domain-containing protein [Cupriavidus sp. UYPR2.512] diamond 150 84.3 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. UYPR2.512
30549260 30549260 PRJNA397065_S_NODE_15673_length_181_cov_2.473684_g15423_i0 PRJNA397065 15673 181 2.473684 4.47736804 Cupriavidus pinatubonensis 248026 Bacteria Bacteria 41.2 0.00715   NR WP_224001239.1 248026 g15423 i0 95 0.331491712707182 20 1 33.1 0 2 61 38 57 WP_224001239.1 hypothetical protein [Cupriavidus pinatubonensis] diamond 60 41.2 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus pinatubonensis
30913748 30913748 PRJNA397065_S_NODE_19714_length_151_cov_2.311475_g19464_i0 PRJNA397065 19714 151 2.311475 3.49032725 Betaproteobacteria 28216 Bacteria Bacteria 40.8 0.0499   NR WP_175858439.1 179879 g19464 i0 100 3.39735099337748 19 0 37.7 0 93 149 1 19 WP_175858439.1 type I restriction-modification system subunit M [Burkholderia anthina] diamond 513 40.8 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Burkholderia Burkholderia anthina
30928565 30928565 PRJNA397065_S_NODE_13574_length_203_cov_1.620690_g13324_i0 PRJNA397065 13574 203 1.62069 3.2900006999999998 Cupriavidus metallidurans 119219 Bacteria Bacteria 88.6 3.19e-19   NR WP_141192944.1 119219 g13324 i0 100 2.40886699507389 48 0 70.9 0 202 59 240 287 WP_141192944.1 hypothetical protein [Cupriavidus metallidurans] diamond 489 88.6 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans
31023267 31023267 PRJNA397065_S_NODE_17935_length_163_cov_1.395522_g17685_i0 PRJNA397065 17935 163 1.395522 2.27470086 Cupriavidus metallidurans 119219 Bacteria Bacteria 106 1.03e-25   NR WP_231108877.1 119219 g17685 i0 100 0.975460122699387 53 0 97.5 0 161 3 69 121 WP_231108877.1 hypothetical protein [Cupriavidus metallidurans] diamond 159 106 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans
31086441 31086441 PRJNA397065_S_NODE_14055_length_197_cov_2.982143_g13805_i0 PRJNA397065 14055 197 2.982143 5.87482171 Cupriavidus metallidurans 119219 Bacteria Bacteria 128 5.57e-34   NR WP_231108877.1 119219 g13805 i0 100 0.989847715736041 65 0 99 0 195 1 2 66 WP_231108877.1 hypothetical protein [Cupriavidus metallidurans] diamond 195 128 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans
31307635 31307635 PRJNA397065_S_NODE_18935_length_156_cov_2.212598_g18685_i0 PRJNA397065 18935 156 2.212598 3.45165288 Cupriavidus metallidurans 119219 Bacteria Bacteria 110 1.06e-29   NR WP_375199121.1 119219 g18685 i0 100 1 52 0 100 0 1 156 6 57 WP_375199121.1 hypothetical protein [Cupriavidus metallidurans] diamond 156 110 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans
31781973 31781973 PRJNA397065_S_NODE_18397_length_160_cov_1.076336_g18147_i0 PRJNA397065 18397 160 1.076336 1.7221376 Aminobacter sp. MDW-2 2666139 Bacteria Bacteria 87.4 2.2e-18   NR WP_154384638.1 2666139 g18147 i0 79.2 0.99375 53 11 99.4 0 1 159 1787 1839 WP_154384638.1 PLxRFG domain-containing protein [Aminobacter sp. MDW-2] diamond 159 87.4 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Aminobacter Aminobacter sp. MDW-2
32667464 32667464 PRJNA397065_S_NODE_9020_length_281_cov_2.015873_g8770_i0 PRJNA397065 9020 281 2.015873 5.66460313 Cupriavidus metallidurans 119219 Bacteria Bacteria 187 3.48e-57   NR WP_141192944.1 119219 g8770 i0 100 1.98576512455516 93 0 99.3 0 3 281 124 216 WP_141192944.1 hypothetical protein [Cupriavidus metallidurans] diamond 558 187 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus metallidurans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;