RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA397065" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 1 ✖

bioproject 1

  • PRJNA397065 · 1 ✖

analysis 1

  • diamond · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30297031 30297031 PRJNA397065_S_NODE_17952_length_162_cov_8.496241_g17702_i0 PRJNA397065 17952 162 8.496241 13.76391042 Planctomycetota bacterium 2026780 Bacteria Bacteria 42 0.0232   NR MEN9554679.1 2026780 g17702 i0 45.7 0.648148148148148 35 19 64.8 0 148 44 403 437 MEN9554679.1 hypothetical protein [Planctomycetota bacterium] diamond 105 42 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;