RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA396510" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA396510 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20813542 20813542 PRJNA396510_P_NODE_16257_length_161_cov_1.366071_g16188_i0 PRJNA396510 16257 161 1.366071 2.19937431 Pseudomonadati 3379134 Bacteria Bacteria 98.6 3.88e-25   NR MCH3765028.1 195 g16188 i0 96.2 5.92546583850932 53 2 98.8 0 160 2 13 65 MCH3765028.1 resolvase [Campylobacter coli] diamond 954 98.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
29854293 29854293 PRJNA396510_P_NODE_13631_length_166_cov_0.871795_g13562_i0 PRJNA396510 13631 166 0.871795 1.4471797 Helicobacter pylori 210 Bacteria Bacteria 67.4 3.1e-13   NR GAA6795231.1 210 g13562 i0 78.9 1.28313253012048 38 8 68.7 0 52 165 1 38 GAA6795231.1 hypothetical protein Kyoto200A_0100 [Helicobacter pylori] diamond 213 67.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32035260 32035260 PRJNA396510_P_NODE_9098_length_199_cov_0.913333_g9029_i0 PRJNA396510 9098 199 0.913333 1.81753267 Helicobacter pylori 210 Bacteria Bacteria 73.6 1.06e-15   NR GAA8838853.1 210 g9029 i0 89.2 0.557788944723618 37 4 55.8 0 1 111 7 43 GAA8838853.1 hypothetical protein Kyoto149A_5200 [Helicobacter pylori] diamond 111 73.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;