RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA396510" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA396510 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28875416 28875416 PRJNA396510_P_NODE_11428_length_179_cov_1.176923_g11359_i0 PRJNA396510 11428 179 1.176923 2.10669217 Chitinophagaceae bacterium 1869212 Bacteria Bacteria 43.1 0.0108   NR RYG34286.1 1869212 g11359 i0 40 0.837988826815642 50 29 83.8 1 170 21 131 179 RYG34286.1 MAG: RNA methyltransferase [Chitinophagaceae bacterium] diamond 150 43.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
31307634 31307634 PRJNA396510_P_NODE_5815_length_241_cov_1.078125_g5746_i0 PRJNA396510 5815 241 1.078125 2.59828125 Catalimonadaceae bacterium 2927946 Bacteria Bacteria 42.4 0.0488   NR HRH34362.1 2927946 g5746 i0 38.1 0.784232365145228 63 32 71 3 37 207 119 180 HRH34362.1 glycoside hydrolase family 3 N-terminal domain-containing protein [Catalimonadaceae bacterium] diamond 189 42.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Catalimonadaceae   Catalimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;