contig_metadata
7 rows where analysis = "diamond", bioproject = "PRJNA396510" and tax_phylum = "Bacillota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 411888 | 411888 | PRJNA396510_P_NODE_15361_length_163_cov_0.894737_g15292_i0 | PRJNA396510 | 15361 | 163 | 0.894737 | 1.45842131 | Streptococcus thermophilus | 1308 | Bacteria | Bacteria | 112 | 5.08e-27 | NR | TKW62483.1 | 1308 | g15292 | i0 | 100 | 1.98773006134969 | 54 | 0 | 99.4 | 0 | 1 | 162 | 550 | 603 | TKW62483.1 MAG: hypothetical protein DI612_08705, partial [Streptococcus thermophilus] | diamond | 324 | 112 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus thermophilus | ||
| 26726804 | 26726804 | PRJNA396510_P_NODE_14301_length_165_cov_0.879310_g14232_i0 | PRJNA396510 | 14301 | 165 | 0.87931 | 1.4508615 | Levyella massiliensis | 938289 | Bacteria | Bacteria | 112 | 2.9e-28 | NR | WP_019190309.1 | 938289 | g14232 | i0 | 96.3 | 0.981818181818182 | 54 | 2 | 98.2 | 0 | 3 | 164 | 116 | 169 | WP_019190309.1 MaoC/PaaZ C-terminal domain-containing protein [Levyella massiliensis] | diamond | 162 | 112 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Levyella | Levyella massiliensis | |||
| 28797221 | 28797221 | PRJNA396510_P_NODE_15507_length_163_cov_0.894737_g15438_i0 | PRJNA396510 | 15507 | 163 | 0.894737 | 1.45842131 | Bacteria | 2 | Bacteria | Bacteria | 106 | 7.45e-28 | NR | MBN9993869.1 | 1639 | g15438 | i0 | 100 | 3.97546012269939 | 54 | 0 | 99.4 | 0 | 163 | 2 | 28 | 81 | MBN9993869.1 hypothetical protein [Listeria monocytogenes] | diamond | 648 | 106 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Listeriaceae | Listeria | Listeria monocytogenes | ||
| 30486162 | 30486162 | PRJNA396510_P_NODE_9953_length_191_cov_0.838028_g9884_i0 | PRJNA396510 | 9953 | 191 | 0.838028 | 1.60063348 | Paenibacillus gyeongsangnamensis | 3388067 | Bacteria | Bacteria | 41.6 | 0.0479 | NR | WP_269884168.1 | 3388067 | g9884 | i0 | 31 | 0.910994764397906 | 58 | 38 | 91.1 | 2 | 184 | 11 | 65 | 120 | WP_269884168.1 uracil/xanthine transporter [Paenibacillus gyeongsangnamensis] | diamond | 174 | 41.6 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus gyeongsangnamensis | ||
| 31577575 | 31577575 | PRJNA396510_P_NODE_5156_length_254_cov_1.087805_g5087_i0 | PRJNA396510 | 5156 | 254 | 1.087805 | 2.7630247 | Paenibacillus | 44249 | Bacteria | Bacteria | 42.7 | 0.0402 | NR | WP_238655226.1 | 1089681 | g5087 | i0 | 36.2 | 1.37007874015748 | 58 | 37 | 68.5 | 0 | 33 | 206 | 143 | 200 | WP_238655226.1 alpha/beta hydrolase [Paenibacillus piscarius] | diamond | 348 | 42.7 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus piscarius | ||
| 32130356 | 32130356 | PRJNA396510_P_NODE_15258_length_163_cov_0.894737_g15189_i0 | PRJNA396510 | 15258 | 163 | 0.894737 | 1.45842131 | Mediannikoviicoccus vaginalis | 2899727 | Bacteria | Bacteria | 92.4 | 3.82e-20 | NR | WP_237036350.1 | 2899727 | g15189 | i0 | 92.5 | 0.975460122699387 | 53 | 4 | 97.5 | 0 | 3 | 161 | 801 | 853 | WP_237036350.1 DNA mismatch repair protein MutS [Mediannikoviicoccus vaginalis] | diamond | 159 | 92.4 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Peptostreptococcales | Peptostreptococcaceae | Mediannikoviicoccus | Mediannikoviicoccus vaginalis | ||
| 32351877 | 32351877 | PRJNA396510_P_NODE_13979_length_166_cov_0.863248_g13910_i0 | PRJNA396510 | 13979 | 166 | 0.863248 | 1.43299168 | Oscillospiraceae bacterium | 2485925 | Bacteria | Bacteria | 47.4 | 3.1e-4 | NR | MBE6951160.1 | 2485925 | g13910 | i0 | 45 | 0.72289156626506 | 40 | 22 | 72.3 | 0 | 40 | 159 | 49 | 88 | MBE6951160.1 hypothetical protein [Oscillospiraceae bacterium] | diamond | 120 | 47.4 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Oscillospiraceae | Oscillospiraceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;