RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA395690" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA395690 · 17 ✖

analysis 1

  • diamond · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26790621 26790621 PRJNA395690_P_NODE_15721_length_205_cov_1.307692_g15569_i0 PRJNA395690 15721 205 1.307692 2.6807686 Ciona intestinalis 7719 Chordata Chordata 42 0.0443   NR XP_026694186.1 7719 g15569 i0 38.3 0.878048780487805 60 32 80.5 1 41 205 16 75 XP_026694186.1 uncharacterized protein LOC104266555 [Ciona intestinalis] diamond 180 42 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
26948681 26948681 PRJNA395690_P_NODE_12562_length_230_cov_1.392265_g12410_i0 PRJNA395690 12562 230 1.392265 3.2022095 Eublepharis macularius 481883 Chordata Chordata 47.4 6.78e-4   NR XP_054856576.1 481883 g12410 i0 44.8 0.756521739130435 58 32 75.7 0 216 43 227 284 XP_054856576.1 RAD51-associated protein 1 [Eublepharis macularius] diamond 174 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Eublepharidae Eublepharis Eublepharis macularius
28639776 28639776 PRJNA395690_P_NODE_25807_length_173_cov_1.169355_g25655_i0 PRJNA395690 25807 173 1.169355 2.02298415 Metazoa 33208 Chordata Chordata 74.3 9.39e-14   NR AFM87703.1 7868 g25655 i0 63.5 6.39884393063584 52 19 90.2 0 169 14 217 268 AFM87703.1 antiquitin [Callorhinchus milii] diamond 1107 74.3 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
28828871 28828871 PRJNA395690_P_NODE_30948_length_165_cov_0.879310_g30796_i0 PRJNA395690 30948 165 0.87931 1.4508615 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.1 3.48e-5   NR KAG9470010.1 57060 g30796 i0 43.6 1.90909090909091 55 31 100 0 165 1 655 709 KAG9470010.1 hypothetical protein GDO78_019133 [Eleutherodactylus coqui] diamond 315 50.4 0.994047619047619 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Eleutherodactylidae Eleutherodactylus Eleutherodactylus coqui
29064966 29064966 PRJNA395690_P_NODE_33188_length_163_cov_0.894737_g33036_i0 PRJNA395690 33188 163 0.894737 1.45842131 Grallaria varia 117165 Chordata Chordata 42.7 0.0124   NR NXG13368.1 117165 g33036 i0 50 6.95705521472393 36 17 64.4 1 21 125 349 384 NXG13368.1 LYAM3 protein [Grallaria varia] diamond 1134 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Formicariidae Grallaria Grallaria varia
29176525 29176525 PRJNA395690_P_NODE_20149_length_186_cov_1.489051_g19997_i0 PRJNA395690 20149 186 1.489051 2.76963486 root 1 Root_unresolved Root_unresolved 126 6.72e-33   NR KAJ1172809.1 8319 g19997 i0 98.4 300.91935483871 61 1 98.4 0 2 184 291 351 KAJ1172809.1 hypothetical protein NDU88_004651 [Pleurodeles waltl] diamond 55971 127 0.992125984251969 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
29222918 29222918 PRJNA395690_P_NODE_5529_length_340_cov_2.704467_g5379_i0 PRJNA395690 5529 340 2.704467 9.1951878 Ranitomeya imitator 111125 Chordata Chordata 48.1 0.00144   NR CAJ0939377.1 111125 g5379 i0 31.2 1.93235294117647 109 49 81.2 4 309 34 181 280 CAJ0939377.1 unnamed protein product, partial [Ranitomeya imitator] diamond 657 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
29460178 29460178 PRJNA395690_P_NODE_18150_length_191_cov_1.436620_g17998_i0 PRJNA395690 18150 191 1.43662 2.7439442 Metazoa 33208 Chordata Chordata 87.8 2.47e-18   NR XP_043938962.1 7888 g17998 i0 97.6 13.1937172774869 42 1 66 0 3 128 640 681 XP_043938962.1 glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 [Protopterus annectens] diamond 2520 88.6 0.99097065462754 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
29492033 29492033 PRJNA395690_P_NODE_35770_length_161_cov_0.910714_g35618_i0 PRJNA395690 35770 161 0.910714 1.46624954 Aves 8782 Chordata Chordata 71.6 7.82e-13   NR XP_068775298.1 8801 g35618 i0 57.7 25.0993788819876 52 22 96.9 0 3 158 232 283 XP_068775298.1 bifunctional coenzyme A synthase [Struthio camelus] diamond 4041 71.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Struthioniformes Struthionidae Struthio Struthio camelus
29744414 29744414 PRJNA395690_P_NODE_26110_length_172_cov_1.373984_g25958_i0 PRJNA395690 26110 172 1.373984 2.36325248 Rodentia 9989 Chordata Chordata 69.3 2.43e-12   NR XP_048196323.1 214514 g25958 i0 61.4 16.203488372093 44 17 76.7 0 171 40 207 250 XP_048196323.1 serine protease 1-like [Perognathus longimembris pacificus] diamond 2787 69.7 0.994261119081779 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Heteromyidae Perognathus Perognathus longimembris
30328658 30328658 PRJNA395690_P_NODE_27612_length_168_cov_1.689076_g27460_i0 PRJNA395690 27612 168 1.689076 2.83764768 Myotis myotis 51298 Chordata Chordata 42.7 0.0141   NR KAF6311472.1 51298 g27460 i0 50 0.642857142857143 36 18 64.3 0 1 108 475 510 KAF6311472.1 xylulokinase [Myotis myotis] diamond 108 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis myotis
30738783 30738783 PRJNA395690_P_NODE_4274_length_382_cov_1.933934_g4125_i0 PRJNA395690 4274 382 1.933934 7.38762788 Erpetoichthys calabaricus 27687 Chordata Chordata 70.5 2.39e-11   NR XP_051791274.1 27687 g4125 i0 73.5 2.35602094240838 49 12 37.7 1 106 249 156 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 900 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
30833655 30833655 PRJNA395690_P_NODE_28514_length_167_cov_0.864407_g28362_i0 PRJNA395690 28514 167 0.864407 1.44355969 Anolis carolinensis 28377 Chordata Chordata 46.2 8e-4   NR XP_062822139.1 28377 g28362 i0 55 2.2814371257485 40 17 70.1 1 117 1 749 788 XP_062822139.1 polyhomeotic-like protein 2 isoform X2 [Anolis carolinensis] diamond 381 46.6 0.991416309012876 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis carolinensis
31261235 31261235 PRJNA395690_P_NODE_10695_length_249_cov_1.275000_g10543_i0 PRJNA395690 10695 249 1.275 3.17475 Mammalia 40674 Chordata Chordata 85.9 5.16e-19   NR XP_058138446.1 9361 g10543 i0 65.2 70.7228915662651 66 23 79.5 0 6 203 93 158 XP_058138446.1 large ribosomal subunit protein uL23-like [Dasypus novemcinctus] diamond 17610 86.7 0.990772779700115 Eukaryota Opisthokonta Metazoa Chordata Mammalia Cingulata Dasypodidae Dasypus Dasypus novemcinctus
31813739 31813739 PRJNA395690_P_NODE_26457_length_171_cov_1.647541_g26305_i0 PRJNA395690 26457 171 1.647541 2.81729511 Branchiostoma belcheri 7741 Chordata Chordata 64.3 3.39e-10   NR XP_019623710.1 7741 g26305 i0 67.5 2.10526315789474 40 13 70.2 0 8 127 147 186 XP_019623710.1 PREDICTED: fibrillin-1-like [Branchiostoma belcheri] diamond 360 64.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
32589973 32589973 PRJNA395690_P_NODE_27019_length_170_cov_1.264463_g26867_i0 PRJNA395690 27019 170 1.264463 2.1495871 Mammalia 40674 Chordata Chordata 87 2.55e-18   NR OWK10815.1 46360 g26867 i0 80.4 4.57058823529412 51 10 90 0 156 4 63 113 OWK10815.1 hypothetical protein Celaphus_00005060, partial [Cervus elaphus hippelaphus] diamond 777 87 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
32841586 32841586 PRJNA395690_P_NODE_6520_length_315_cov_2.285714_g6368_i0 PRJNA395690 6520 315 2.285714 7.1999991 Metazoa 33208 Chordata Chordata 84.7 1.42e-16   NR XP_064126597.1 9785 g6368 i0 77.1 7.77142857142857 48 11 45.7 0 170 313 16 63 XP_064126597.1 protein disulfide-isomerase isoform X2 [Loxodonta africana] diamond 2448 84.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Proboscidea Elephantidae Loxodonta Loxodonta africana

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;