RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA395690" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA395690 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20205214 20205214 PRJNA395690_P_NODE_30176_length_166_cov_0.871795_g30024_i0 PRJNA395690 30176 166 0.871795 1.4471797 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 91.3 7.44e-20   NR MCB0371130.1 2053517 g30024 i0 83.3 0.975903614457831 54 9 97.6 0 164 3 168 221 MCB0371130.1 ATP-grasp domain-containing protein [Bdellovibrionales bacterium] diamond 162 91.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28686217 28686217 PRJNA395690_P_NODE_33767_length_163_cov_0.894737_g33615_i0 PRJNA395690 33767 163 0.894737 1.45842131 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 91.7 3.02e-21   NR MES2526518.1 3034175 g33615 i0 77.8 0.993865030674847 54 12 99.4 0 1 162 157 210 MES2526518.1 hypothetical protein [Bdellovibrionota bacterium] diamond 162 91.7 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28970161 28970161 PRJNA395690_P_NODE_27928_length_167_cov_2.355932_g27776_i0 PRJNA395690 27928 167 2.355932 3.93440644 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 88.6 6.61e-19   NR MBX3021047.1 2053517 g27776 i0 72.7 0.988023952095808 55 14 97 1 2 163 358 412 MBX3021047.1 type IV pilus twitching motility protein PilT [Bdellovibrionales bacterium] diamond 165 88.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29380587 29380587 PRJNA395690_P_NODE_30029_length_166_cov_0.871795_g29877_i0 PRJNA395690 30029 166 0.871795 1.4471797 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 47.8 7.46e-5   NR HVK62452.1 2053517 g29877 i0 80.6 1.13855421686747 31 6 56 0 164 72 106 136 HVK62452.1 hypothetical protein [Bdellovibrionales bacterium] diamond 189 47.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30486140 30486140 PRJNA395690_P_NODE_31453_length_165_cov_0.879310_g31301_i0 PRJNA395690 31453 165 0.87931 1.4508615 Halobacteriovoraceae bacterium 2026745 Bacteria Bacteria 79.7 1.17e-15   NR MAZ48396.1 2026745 g31301 i0 71.7 1.92727272727273 53 15 96.4 0 161 3 704 756 MAZ48396.1 hypothetical protein [Halobacteriovoraceae bacterium] diamond 318 79.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium
30738782 30738782 PRJNA395690_P_NODE_37274_length_152_cov_2.563107_g37121_i0 PRJNA395690 37274 152 2.563107 3.89592264 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 69.3 4.47e-12   NR MFN8790112.1 2053517 g37121 i0 70 1.95394736842105 50 15 98.7 0 3 152 368 417 MFN8790112.1 type IV secretory system conjugative DNA transfer family protein [Bdellovibrionales bacterium] diamond 297 69.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31672310 31672310 PRJNA395690_P_NODE_18097_length_191_cov_1.830986_g17945_i0 PRJNA395690 18097 191 1.830986 3.49718326 Pseudomonadati 3379134 Bacteria Bacteria 61.2 5.5e-9   NR WP_061833089.1 959 g17945 i0 81.8 2.56020942408377 33 6 51.8 0 190 92 415 447 WP_061833089.1 sensor histidine kinase [Bdellovibrio bacteriovorus] diamond 489 61.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;