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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJNA393181" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 31 ✖

tax_kingdom 1

bioproject 1

  • PRJNA393181 · 31 ✖

analysis 1

  • diamond · 31 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
410294 410294 PRJNA393181_S_NODE_21821_length_250_cov_2.699531_g21715_i0 PRJNA393181 21821 250 2.699531 6.7488275 Syntrophorhabdaceae bacterium PtaU1.Bin 2660714 Bacteria Bacteria 59.7 4.18e-8   NR OPY70043.1 1811715 g21715 i0 68.1 0.564 47 15 56.4 0 147 7 2 48 OPY70043.1 MAG: FtsX-like permease family protein [Syntrophorhabdaceae bacterium PtaU1.Bin034] diamond 141 59.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae   Syntrophorhabdaceae bacterium PtaU1.Bin034
410447 410447 PRJNA393181_S_NODE_27721_length_215_cov_2.410112_g27615_i0 PRJNA393181 27721 215 2.410112 5.1817408 Desulfarculaceae bacterium 2528248 Bacteria Bacteria 70.5 2.92e-12   NR MCF8033491.1 2528248 g27615 i0 60 2.23255813953488 55 22 76.7 0 2 166 259 313 MCF8033491.1 ABC transporter permease [Desulfarculaceae bacterium] diamond 480 70.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae   Desulfarculaceae bacterium
4237314 4237314 PRJNA393181_S_NODE_19784_length_265_cov_2.333333_g19678_i0 PRJNA393181 19784 265 2.333333 6.18333245 Desulfosarcina sp. 2027861 Bacteria Bacteria 92.8 1.15e-19   NR WP_372683685.1 2027861 g19678 i0 73.6 1.53962264150943 53 14 60 0 265 107 497 549 WP_372683685.1 GMC oxidoreductase [Desulfosarcina sp.] diamond 408 92.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina Desulfosarcina sp.
4238020 4238020 PRJNA393181_S_NODE_47944_length_150_cov_1.203540_g47838_i0 PRJNA393181 47944 150 1.20354 1.80531 Pseudomonadati 3379134 Bacteria Bacteria 73.6 1.38e-13   NR KJS00136.1 1629713 g47838 i0 82.9 5.24 41 7 82 0 124 2 477 517 KJS00136.1 MAG: beta-(1-3)-glucosyl transferase [Desulfobulbaceae bacterium BRH_c16a] diamond 786 73.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae   Desulfobulbaceae bacterium BRH_c16a
9339150 9339150 PRJNA393181_S_NODE_7868_length_425_cov_3.280928_g7762_i0 PRJNA393181 7868 425 3.280928 13.943944 Desulfovibrio legallii 571438 Bacteria Bacteria 160 1.73e-45   NR WP_092153084.1 571438 g7762 i0 63.2 3.65647058823529 125 40 88.2 2 383 9 27 145 WP_092153084.1 metal ABC transporter substrate-binding protein [Desulfovibrio legallii] diamond 1554 160 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio legallii
12557225 12557225 PRJNA393181_S_NODE_33930_length_189_cov_1.500000_g33824_i0 PRJNA393181 33930 189 1.5 2.835 Desulfobacterales bacterium 2044940 Bacteria Bacteria 105 3.45e-25   NR MDO8941782.1 2044940 g33824 i0 77.4 1.96825396825397 62 14 98.4 0 2 187 177 238 MDO8941782.1 NADH:flavin oxidoreductase [Desulfobacterales bacterium] diamond 372 105 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
16987735 16987735 PRJNA393181_S_NODE_21154_length_255_cov_2.064220_g21048_i0 PRJNA393181 21154 255 2.06422 5.263761 Geoalkalibacter sp. 3041440 Bacteria Bacteria 72.8 1.14e-12   NR WP_305044591.1 3041440 g21048 i0 42.7 2.90588235294118 82 47 96.5 0 3 248 398 479 WP_305044591.1 EAL domain-containing protein [Geoalkalibacter sp.] diamond 741 72.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geoalkalibacteraceae Geoalkalibacter Geoalkalibacter sp.
19536897 19536897 PRJNA393181_S_NODE_8296_length_415_cov_3.126984_g8190_i0 PRJNA393181 8296 415 3.126984 12.9769836 Desulfobaccales bacterium 3064668 Bacteria Bacteria 109 1.26e-25   NR MEJ5329986.1 3064668 g8190 i0 40.6 1.86506024096386 128 76 92.5 0 10 393 60 187 MEJ5329986.1 hypothetical protein [Desulfobaccales bacterium] diamond 774 109 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobaccia Desulfobaccales     Desulfobaccales bacterium
20811961 20811961 PRJNA393181_S_NODE_22917_length_243_cov_1.296117_g22811_i0 PRJNA393181 22917 243 1.296117 3.14956431 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 135 6.209999999999999e-37   NR HEY8370053.1 2202153 g22811 i0 83.8 0.987654320987654 80 13 98.8 0 3 242 189 268 HEY8370053.1 AraC family transcriptional regulator [Thermodesulfobacteriota bacterium] diamond 240 135 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
22086461 22086461 PRJNA393181_S_NODE_10458_length_373_cov_2.919643_g10352_i0 PRJNA393181 10458 373 2.919643 10.89026839 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 105 9.34e-27   NR HEX7126293.1 2202153 g10352 i0 84.6 1.0455764075067 65 10 52.3 0 197 3 1 65 HEX7126293.1 AzlD domain-containing protein [Thermodesulfobacteriota bacterium] diamond 390 105 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
22086493 22086493 PRJNA393181_S_NODE_11618_length_354_cov_2.974763_g11512_i0 PRJNA393181 11618 354 2.974763 10.53066102 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 168 2.0299999999999998e-48   NR HEX7125912.1 2202153 g11512 i0 78.4 1.96610169491525 116 25 98.3 0 7 354 161 276 HEX7125912.1 Na+/H+ antiporter NhaC family protein [Thermodesulfobacteriota bacterium] diamond 696 168 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
25304620 25304620 PRJNA393181_S_NODE_2860_length_622_cov_3.295726_g2778_i0 PRJNA393181 2860 622 3.295726 20.49941572 Geobacteraceae bacterium 2282154 Bacteria Bacteria 176 5.64e-47   NR HTP65484.1 2282154 g2778 i0 48.9 1.80385852090032 182 84 84.4 5 605 81 718 897 HTP65484.1 glycoside hydrolase family 44 protein [Geobacteraceae bacterium] diamond 1122 176 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae   Geobacteraceae bacterium
26980299 26980299 PRJNA393181_S_NODE_10282_length_376_cov_3.327434_g10176_i0 PRJNA393181 10282 376 3.327434 12.51115184 Desulfocurvus sp. 2871698 Bacteria Bacteria 84 6.04e-16   NR WP_291496172.1 2871698 g10176 i0 39 0.941489361702128 118 72 94.1 0 15 368 334 451 WP_291496172.1 adenylate/guanylate cyclase domain-containing protein [Desulfocurvus sp.] diamond 354 84 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfocurvus Desulfocurvus sp.
27250138 27250138 PRJNA393181_S_NODE_28143_length_213_cov_2.613636_g28037_i0 PRJNA393181 28143 213 2.613636 5.56704468 Pseudomonadati 3379134 Bacteria Bacteria 100 1.02e-22   NR WP_302548833.1 167968 g28037 i0 64.2 2.83098591549296 67 24 94.4 0 203 3 56 122 WP_302548833.1 glycosyltransferase [uncultured Desulfovibrio sp.] diamond 603 100 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio uncultured Desulfovibrio sp.
27313557 27313557 PRJNA393181_S_NODE_17063_length_289_cov_2.027778_g16957_i0 PRJNA393181 17063 289 2.027778 5.86027842 Syntrophus 43773 Bacteria Bacteria 135 8.67e-37   NR HPX81172.1 2928017 g16957 i0 63.8 7.79584775086505 94 34 97.6 0 8 289 189 282 HPX81172.1 proline iminopeptidase-family hydrolase [Syntrophales bacterium] diamond 2253 136 0.992647058823529 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium
27391522 27391522 PRJNA393181_S_NODE_14143_length_320_cov_3.487633_g14037_i0 PRJNA393181 14143 320 3.487633 11.1604256 Desulfacinum hydrothermale 109258 Bacteria Bacteria 76.3 1.59e-13   NR WP_084059015.1 109258 g14037 i0 68 0.946875 50 16 46.9 0 154 5 3 52 WP_084059015.1 CRISPR-associated helicase/endonuclease Cas3 [Desulfacinum hydrothermale] diamond 303 76.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Desulfacinum Desulfacinum hydrothermale
27707543 27707543 PRJNA393181_S_NODE_20344_length_261_cov_1.558036_g20238_i0 PRJNA393181 20344 261 1.558036 4.06647396 Geobacter sp. SVR 2495594 Bacteria Bacteria 48.9 2.12e-5   NR BCS53332.1 2495594 g20238 i0 41.3 0.724137931034483 63 34 70.1 2 31 213 1 62 BCS53332.1 hypothetical protein GSVR_16400 [Geobacter sp. SVR] diamond 189 48.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp. SVR
27850054 27850054 PRJNA393181_S_NODE_18304_length_277_cov_3.087500_g18198_i0 PRJNA393181 18304 277 3.0875 8.552375 Pseudomonadati 3379134 Bacteria Bacteria 64.3 1.42e-9   NR HVN97165.1 2660714 g18198 i0 50 1.31046931407942 62 28 63.9 1 3 179 852 913 HVN97165.1 PAS domain S-box protein [Syntrophorhabdaceae bacterium] diamond 363 64.7 0.993817619783617 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae   Syntrophorhabdaceae bacterium
28749051 28749051 PRJNA393181_S_NODE_27667_length_215_cov_3.247191_g27561_i0 PRJNA393181 27667 215 3.247191 6.98146065 Desulfuromonas sp. 892 Bacteria Bacteria 47 7.15e-4   NR NJC88504.1 892 g27561 i0 80 0.348837209302326 25 5 34.9 0 83 9 3 27 NJC88504.1 class I SAM-dependent methyltransferase [Desulfuromonas sp.] diamond 75 47 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp.
29285676 29285676 PRJNA393181_S_NODE_19629_length_266_cov_2.445415_g19523_i0 PRJNA393181 19629 266 2.445415 6.5048039 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 63.2 1.32e-9   NR HEY8370052.1 2202153 g19523 i0 78.6 1.42105263157895 42 9 47.4 0 140 265 11 52 HEY8370052.1 AzlC family ABC transporter permease [Thermodesulfobacteriota bacterium] diamond 378 63.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
29474966 29474966 PRJNA393181_S_NODE_23530_length_238_cov_3.835821_g23424_i0 PRJNA393181 23530 238 3.835821 9.12925398 Desulfovibrio sp. 885 Bacteria Bacteria 77.8 1.46e-14   NR MDR2054780.1 885 g23424 i0 52.9 0.857142857142857 68 32 85.7 0 33 236 300 367 MDR2054780.1 hypothetical protein [Desulfovibrio sp.] diamond 204 77.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
30738738 30738738 PRJNA393181_S_NODE_43354_length_160_cov_1.902439_g43248_i0 PRJNA393181 43354 160 1.902439 3.0439024 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 49.3 5.75e-5   NR HEX7127940.1 2202153 g43248 i0 59.6 0.975 52 21 97.5 0 156 1 214 265 HEX7127940.1 DMT family transporter [Thermodesulfobacteriota bacterium] diamond 156 49.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
30801905 30801905 PRJNA393181_S_NODE_17874_length_281_cov_2.627049_g17768_i0 PRJNA393181 17874 281 2.627049 7.38200769 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 83.2 3.53e-18   NR MFC1885957.1 2202153 g17768 i0 55.9 1.45195729537367 68 30 72.6 0 206 3 1 68 MFC1885957.1 response regulator [Thermodesulfobacteriota bacterium] diamond 408 83.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
30833577 30833577 PRJNA393181_S_NODE_13074_length_334_cov_1.905724_g12968_i0 PRJNA393181 13074 334 1.905724 6.36511816 Desulfobulbaceae bacterium 2053307 Bacteria Bacteria 92.4 8.73e-22   NR NTU49558.1 2053307 g12968 i0 50.6 0.79940119760479 89 42 79.9 1 271 5 1 87 NTU49558.1 hypothetical protein [Desulfobulbaceae bacterium] diamond 267 92.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae   Desulfobulbaceae bacterium
31244311 31244311 PRJNA393181_S_NODE_21515_length_252_cov_3.116279_g21409_i0 PRJNA393181 21515 252 3.116279 7.85302308 Desulfocurvibacter africanus 873 Bacteria Bacteria 85.1 4.98e-19   NR WP_005986495.1 873 g21409 i0 46.8 0.94047619047619 79 42 94 0 1 237 4 82 WP_005986495.1 Rap1a/Tai family immunity protein [Desulfocurvibacter africanus] diamond 237 85.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfocurvibacter Desulfocurvibacter africanus
31465970 31465970 PRJNA393181_S_NODE_21616_length_252_cov_1.772093_g21510_i0 PRJNA393181 21616 252 1.772093 4.46567436 Geomonas sp. Red276 2740183 Bacteria Bacteria 95.9 4.47e-21   NR GFO54458.1 2740183 g21510 i0 60 0.952380952380952 80 30 95.2 1 11 250 296 373 GFO54458.1 adenylosuccinate synthetase [Geomonas sp. Red276] diamond 240 95.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas sp. Red276
31546017 31546017 PRJNA393181_S_NODE_17316_length_286_cov_2.622490_g17210_i0 PRJNA393181 17316 286 2.62249 7.5003214 Pseudomonadati 3379134 Bacteria Bacteria 52 3.28e-5   NR WP_084539282.1 458711 g17210 i0 58.1 1.18531468531469 43 18 45.1 0 3 131 49 91 WP_084539282.1 amino acid ABC transporter permease [Halodesulfovibrio marinisediminis] diamond 339 52 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Halodesulfovibrio Halodesulfovibrio marinisediminis
31687106 31687106 PRJNA393181_S_NODE_29497_length_207_cov_2.288235_g29391_i0 PRJNA393181 29497 207 2.288235 4.73664645 Desulfomonile tiedjei 2358 Bacteria Bacteria 47 7.06e-4   NR MBI4964390.1 2358 g29391 i0 42.9 1.89855072463768 49 28 71 0 3 149 41 89 MBI4964390.1 tetratricopeptide repeat protein [Desulfomonile tiedjei] diamond 393 47 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfomonilia Desulfomonilales Desulfomonilaceae Desulfomonile Desulfomonile tiedjei
32161903 32161903 PRJNA393181_S_NODE_12978_length_335_cov_2.110738_g12872_i0 PRJNA393181 12978 335 2.110738 7.0709723 Desulfovibrio mangrovi 2976983 Bacteria Bacteria 91.7 6.66e-20   NR WP_265826154.1 2976983 g12872 i0 61.5 1.32537313432836 78 29 69 1 92 322 173 250 WP_265826154.1 GNAT family N-acetyltransferase [Desulfovibrio mangrovi] diamond 444 91.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio mangrovi
32257039 32257039 PRJNA393181_S_NODE_27858_length_214_cov_3.548023_g27752_i0 PRJNA393181 27858 214 3.548023 7.59276922 Desulfobulbaceae bacterium 2053307 Bacteria Bacteria 55.1 1.09e-6   NR NTU49601.1 2053307 g27752 i0 41.2 1.52803738317757 51 30 71.5 0 212 60 427 477 NTU49601.1 hypothetical protein [Desulfobulbaceae bacterium] diamond 327 55.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae   Desulfobulbaceae bacterium
32478344 32478344 PRJNA393181_S_NODE_15759_length_302_cov_2.196226_g15653_i0 PRJNA393181 15759 302 2.196226 6.63260252 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 125 2.13e-32   NR HDR15392.1 2049433 g15653 i0 60.8 1.91721854304636 97 38 96.4 0 293 3 222 318 HDR15392.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 579 125 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;