RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA393181" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA393181 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27644188 27644188 PRJNA393181_S_NODE_13544_length_327_cov_5.024138_g13438_i0 PRJNA393181 13544 327 5.024138 16.42893126 Natronomonas aquatica 2841590 Archaea Archaea 44.3 0.0153   NR WP_256030377.1 2841590 g13438 i0 36.7 0.55045871559633 60 36 55 1 73 252 46 103 WP_256030377.1 30S ribosomal protein S13 [Natronomonas aquatica] diamond 180 44.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas aquatica
28433399 28433399 PRJNA393181_S_NODE_7946_length_423_cov_2.955959_g7840_i0 PRJNA393181 7946 423 2.955959 12.50370657 Methanothrix sp. 90426 Archaea Archaea 53.5 2.39e-5   NR MCX6670088.1 90426 g7840 i0 64.3 0.297872340425532 42 13 28.4 1 192 311 1 42 MCX6670088.1 tetratricopeptide repeat protein [Methanothrix sp.] diamond 126 53.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
30770566 30770566 PRJNA393181_S_NODE_34254_length_187_cov_3.600000_g34148_i0 PRJNA393181 34254 187 3.6 6.732 Halorhabdus utahensis 146826 Archaea Archaea 42.4 0.0243   NR WP_049941156.1 146826 g34148 i0 52.5 0.641711229946524 40 19 64.2 0 67 186 20 59 WP_049941156.1 glycosyltransferase [Halorhabdus utahensis] diamond 120 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorhabdus Halorhabdus utahensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;