RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA393181" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA393181 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26617274 26617274 PRJNA393181_S_NODE_32681_length_194_cov_1.242038_g32575_i0 PRJNA393181 32681 194 1.242038 2.40955372 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 1.01e-7   NR XP_004345808.1 1257118 g32575 i0 74.3 3.60309278350515 35 9 54.1 0 106 2 27 61 XP_004345808.1 translocase of the inner mitochondrial membrane 14 isoform a, putative [Acanthamoeba castellanii str. Neff] diamond 699 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26663504 26663504 PRJNA393181_S_NODE_47561_length_150_cov_3.964602_g47455_i0 PRJNA393181 47561 150 3.964602 5.946903 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 55.1 4.73e-7   NR XP_004367478.1 1257118 g47455 i0 100 0.52 26 0 52 0 150 73 195 220 XP_004367478.1 heat shock protein 90 alpha, putative [Acanthamoeba castellanii str. Neff] diamond 78 55.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27391540 27391540 PRJNA393181_S_NODE_28943_length_210_cov_1.341040_g28837_i0 PRJNA393181 28943 210 1.34104 2.816184 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 84 5.39e-17   NR XP_004334080.1 1257118 g28837 i0 60.3 0.9 63 22 90 2 21 209 55 114 XP_004334080.1 Serine/threonine phosphatase [Acanthamoeba castellanii str. Neff] diamond 189 84 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28433393 28433393 PRJNA393181_S_NODE_46606_length_153_cov_0.974138_g46500_i0 PRJNA393181 46606 153 0.974138 1.49043114 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 68.9 1.38e-12   NR XP_004339168.1 1257118 g46500 i0 80 0.882352941176471 45 7 88.2 1 136 2 1 43 XP_004339168.1 Mimivirus encoded protein, putative [Acanthamoeba castellanii str. Neff] diamond 135 68.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29649499 29649499 PRJNA393181_S_NODE_47030_length_152_cov_1.017391_g46924_i0 PRJNA393181 47030 152 1.017391 1.54643432 root 1 Root_unresolved Root_unresolved 58.5 2.64e-8   NR XP_004356467.1 1257118 g46924 i0 60.4 1.97368421052632 48 19 94.7 0 149 6 40 87 XP_004356467.1 FAD binding domain containing protein [Acanthamoeba castellanii str. Neff] diamond 300 58.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29790816 29790816 PRJNA393181_S_NODE_6911_length_451_cov_1.770531_g6805_i0 PRJNA393181 6911 451 1.770531 7.98509481 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 204 3.8e-62   NR XP_004356467.1 1257118 g6805 i0 67.3 0.997782705099778 150 49 99.8 0 2 451 85 234 XP_004356467.1 FAD binding domain containing protein [Acanthamoeba castellanii str. Neff] diamond 450 204 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32161914 32161914 PRJNA393181_S_NODE_22358_length_246_cov_3.153110_g22252_i0 PRJNA393181 22358 246 3.15311 7.7566506 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 96.7 1.87e-21   NR XP_004354481.1 1257118 g22252 i0 62.1 0.804878048780488 66 24 80.5 1 3 200 328 392 XP_004354481.1 Ser/Thr phosphatase, putative [Acanthamoeba castellanii str. Neff] diamond 198 96.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32446767 32446767 PRJNA393181_S_NODE_47979_length_150_cov_1.035398_g47873_i0 PRJNA393181 47979 150 1.035398 1.553097 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 56.2 5.72e-8   NR XP_004339458.1 1257118 g47873 i0 89.7 0.58 29 3 58 0 3 89 144 172 XP_004339458.1 shikimate kinase [Acanthamoeba castellanii str. Neff] diamond 87 56.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32698883 32698883 PRJNA393181_S_NODE_39020_length_172_cov_1.748148_g38914_i0 PRJNA393181 39020 172 1.748148 3.00681456 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 78.6 2.77e-15   NR XP_004354481.1 1257118 g38914 i0 67.9 0.924418604651163 53 17 92.4 0 171 13 130 182 XP_004354481.1 Ser/Thr phosphatase, putative [Acanthamoeba castellanii str. Neff] diamond 159 78.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;