RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA390533" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA390533 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26853996 26853996 PRJNA390533_P_NODE_21341_length_364_cov_3.138462_g20317_i0 PRJNA390533 21341 364 3.138462 11.42400168 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 47.8 0.00253   NR KAF0697955.1 120398 g20317 i0 42.9 0.461538461538462 56 27 45.3 3 77 241 504 555 KAF0697955.1 hypothetical protein As57867_011343 [Aphanomyces stellatus] diamond 168 47.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
29712691 29712691 PRJNA390533_P_NODE_11390_length_576_cov_3.877095_g10477_i0 PRJNA390533 11390 576 3.877095 22.3320672 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 165 2.9499999999999995e-48   NR DBA01302.1 4803 g10477 i0 57.4 5.890625 148 57 74.5 2 506 78 36 182 DBA01302.1 TPA: hypothetical protein N0F65_001807 [Lagenidium giganteum] diamond 3393 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;