RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA390533" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA390533 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27454682 27454682 PRJNA390533_P_NODE_23823_length_328_cov_1.802768_g22798_i0 PRJNA390533 23823 328 1.802768 5.91307904 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 67.4 1.64e-10   NR XP_004344951.1 1257118 g22798 i0 41.2 0.777439024390244 85 50 77.7 0 68 322 159 243 XP_004344951.1 uncharacterized protein ACA1_285670, partial [Acanthamoeba castellanii str. Neff] diamond 255 67.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30328560 30328560 PRJNA390533_P_NODE_20052_length_384_cov_3.040580_g19029_i0 PRJNA390533 20052 384 3.04058 11.6758272 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 108 2.17e-28   NR XP_004340849.1 1257118 g19029 i0 94.7 0.4453125 57 3 44.5 0 265 95 3 59 XP_004340849.1 uncharacterized protein ACA1_150550 [Acanthamoeba castellanii str. Neff] diamond 171 108 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;