RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA390533" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA390533 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27106707 27106707 PRJNA390533_P_NODE_14982_length_481_cov_3.789593_g13987_i0 PRJNA390533 14982 481 3.789593 18.22794233 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 62.4 4.16e-8   NR CDW91853.1 5949 g13987 i0 30.1 2.71309771309771 136 87 79.8 4 21 404 150 285 CDW91853.1 UNKNOWN [Stylonychia lemnae] diamond 1305 62.4 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
28243672 28243672 PRJNA390533_P_NODE_4946_length_865_cov_4.645278_g4327_i0 PRJNA390533 4946 865 4.645278 40.1816547 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 59.3 8.19e-7   NR CDW86772.1 5949 g4327 i0 36.7 0.378034682080925 109 60 37.5 4 756 433 14 114 CDW86772.1 UNKNOWN [Stylonychia lemnae] diamond 327 59.3 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
29917432 29917432 PRJNA390533_P_NODE_28811_length_266_cov_2.488987_g27784_i0 PRJNA390533 28811 266 2.488987 6.62070542 Moneuplotes crassus 5936 SAR_Eukaryotes SAR_Eukaryotes 98.2 2.1999999999999996e-24   NR CAI2385228.1 5936 g27784 i0 48.8 0.969924812030075 86 44 97 0 3 260 19 104 CAI2385228.1 unnamed protein product [Moneuplotes crassus] diamond 258 98.2 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;