RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA390533" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA390533 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27629372 27629372 PRJNA390533_P_NODE_30684_length_245_cov_1.577670_g29657_i0 PRJNA390533 30684 245 1.57767 3.8652915 Bacteria 2 Bacteria Bacteria 117 6.329999999999999e-31   NR MCA9342090.1 2026720 g29657 i0 70 1.9469387755102 80 24 98 0 243 4 21 100 MCA9342090.1 VIT1/CCC1 transporter family protein [Candidatus Saccharibacteria bacterium] diamond 477 117 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
27818825 27818825 PRJNA390533_P_NODE_38044_length_190_cov_1.331126_g37017_i0 PRJNA390533 38044 190 1.331126 2.5291394 Candidatus Saccharimonas 1331051 Bacteria Bacteria 99.8 1.52e-22   NR RKW02814.1 1917697 g37017 i0 94.8 1.83157894736842 58 3 91.6 0 188 15 407 464 RKW02814.1 MAG: hypothetical protein D8B38_02535 [Candidatus Saccharimonas sp.] diamond 348 99.8 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
30106736 30106736 PRJNA390533_P_NODE_132_length_2709_cov_5.586142_g104_i0 PRJNA390533 132 2709 5.586142 151.32858678 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 412 3.85e-133   NR HBO64817.1 2026720 g104 i0 62.6 0.355481727574751 321 120 35.5 0 953 1915 8 328 HBO64817.1 glycosyl transferase family 2 [Candidatus Saccharibacteria bacterium] diamond 963 412 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;