RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA390533" and tax_phylum = "Abditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Abditibacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA390533 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
409785 409785 PRJNA390533_P_NODE_38841_length_186_cov_1.333333_g37814_i0 PRJNA390533 38841 186 1.333333 2.47999938 Abditibacteriaceae bacterium 2800791 Bacteria Bacteria 58.9 2.27e-8   NR HEX8552111.1 2800791 g37814 i0 44.3 1.93548387096774 61 33 98.4 1 184 2 4 63 HEX8552111.1 helix-turn-helix domain-containing protein [Abditibacteriaceae bacterium] diamond 360 58.9 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae   Abditibacteriaceae bacterium
20811398 20811398 PRJNA390533_P_NODE_35097_length_208_cov_1.035503_g34070_i0 PRJNA390533 35097 208 1.035503 2.15384624 Abditibacteriaceae bacterium 2800791 Bacteria Bacteria 89.4 9.23e-19   NR HEX8549949.1 2800791 g34070 i0 69.6 0.995192307692308 69 17 99.5 1 2 208 582 646 HEX8549949.1 DEAD/DEAH box helicase family protein [Abditibacteriaceae bacterium] diamond 207 89.4 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae   Abditibacteriaceae bacterium
26854012 26854012 PRJNA390533_P_NODE_42581_length_170_cov_2.412214_g41554_i0 PRJNA390533 42581 170 2.412214 4.1007638 Abditibacteriaceae bacterium 2800791 Bacteria Bacteria 114 1.17e-27   NR HEX8549948.1 2800791 g41554 i0 87.5 0.988235294117647 56 7 98.8 0 169 2 109 164 HEX8549948.1 site-specific DNA-methyltransferase [Abditibacteriaceae bacterium] diamond 168 114 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae   Abditibacteriaceae bacterium
28780438 28780438 PRJNA390533_P_NODE_24307_length_321_cov_1.170213_g23281_i0 PRJNA390533 24307 321 1.170213 3.75638373 Abditibacteriaceae bacterium 2800791 Bacteria Bacteria 120 3.65e-29   NR HEX8549948.1 2800791 g23281 i0 55 1.01869158878505 109 46 99.1 1 318 1 912 1020 HEX8549948.1 site-specific DNA-methyltransferase [Abditibacteriaceae bacterium] diamond 327 120 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae   Abditibacteriaceae bacterium
32066687 32066687 PRJNA390533_P_NODE_42958_length_169_cov_1.515385_g41931_i0 PRJNA390533 42958 169 1.515385 2.56100065 Abditibacteriaceae bacterium 2800791 Bacteria Bacteria 90.1 2.83e-19   NR HEX8549948.1 2800791 g41931 i0 67.9 0.994082840236686 56 18 99.4 0 2 169 229 284 HEX8549948.1 site-specific DNA-methyltransferase [Abditibacteriaceae bacterium] diamond 168 90.1 1 Bacteria   Pseudomonadati Abditibacteriota Abditibacteriia Abditibacteriales Abditibacteriaceae   Abditibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;