RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA390533" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA390533 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14438804 14438804 PRJNA390533_P_NODE_752_length_1677_cov_7.327839_g614_i0 PRJNA390533 752 1677 7.327839 122.88786003 Panax cryptic virus 4 2809267 Viruses Viruses 784 1.01e-281   NR QRG29207.1 2809267 g614 i0 79.2 0.876565295169946 490 102 87.7 0 14 1483 1 490 QRG29207.1 putative CP [Panax cryptic virus 4] diamond 1470 784 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Partitiviridae   Panax cryptic virus 4
31514483 31514483 PRJNA390533_P_NODE_13676_length_512_cov_22.642706_g12701_i0 PRJNA390533 13676 512 22.642706 115.93065472 Viruses 10239 Viruses Viruses 182 9.06e-51   NR UQS93311.1 2933656 g12701 i0 53.4 1.88671875 161 73 93.8 2 490 11 435 594 UQS93311.1 MAG: polymerase PB1 [Bactrocera correcta Orthomyxo-like virus] diamond 966 182 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Bactrocera correcta Orthomyxo-like virus
31623841 31623841 PRJNA390533_P_NODE_19396_length_395_cov_2.064607_g18374_i0 PRJNA390533 19396 395 2.064607 8.15519765 Macrobrachium rosenbergii picorna-like virus 4 3132542 Viruses Viruses 135 5.4e-34   NR WWZ85593.1 3132542 g18374 i0 78.8 0.607594936708861 80 17 60.8 0 395 156 1768 1847 WWZ85593.1 RNA-dependent RNA polymerase [Macrobrachium rosenbergii picorna-like virus 4] diamond 240 135 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Macrobrachium rosenbergii picorna-like virus 4

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;