RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA385396" and tax_phylum = "Streptophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA385396 · 22 ✖

analysis 1

  • diamond · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4233951 4233951 PRJNA385396_P_NODE_16144_length_248_cov_0.880000_g16052_i0 PRJNA385396 16144 248 0.88 2.1824 Klebsormidium nitens 105231 Plants Plants 99 6.54e-22   NR GAQ83598.1 105231 g16052 i0 63.2 4.34274193548387 76 27 91.9 1 246 19 406 480 GAQ83598.1 DEAD-box RNA helicase family protein [Klebsormidium nitens] diamond 1077 99 1 Eukaryota   Viridiplantae Streptophyta Klebsormidiophyceae Klebsormidiales Klebsormidiaceae Klebsormidium Klebsormidium nitens
4234152 4234152 PRJNA385396_P_NODE_3904_length_397_cov_1.188272_g3812_i0 PRJNA385396 3904 397 1.188272 4.71743984 Arabidopsis thaliana 3702 Plants Plants 67 6.76e-10   NR NP_196927.4 3702 g3812 i0 38.5 1.57178841309824 104 56 75.6 3 28 327 304 403 NP_196927.4 ankyrin [Arabidopsis thaliana] diamond 624 67 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana
15709481 15709481 PRJNA385396_P_NODE_11873_length_264_cov_2.821990_g11781_i0 PRJNA385396 11873 264 2.82199 7.4500536 Eukaryota 2759 Plants Plants 126 7.18e-35   NR XP_024398553.1 3218 g11781 i0 64.4 13.7954545454545 87 31 98.9 0 3 263 25 111 XP_024398553.1 nucleoside diphosphate kinase 4, chloroplastic-like isoform X2 [Physcomitrium patens] diamond 3642 126 1 Eukaryota Embryophyta Viridiplantae Streptophyta Bryopsida Funariales Funariaceae Physcomitrium Physcomitrium patens
22083196 22083196 PRJNA385396_P_NODE_12398_length_259_cov_1.602151_g12306_i0 PRJNA385396 12398 259 1.602151 4.14957109 Mikania micrantha 192012 Plants Plants 95.5 1.27e-20   NR KAD5802506.1 192012 g12306 i0 58.3 1.94594594594595 84 34 96.1 1 255 7 4 87 KAD5802506.1 hypothetical protein E3N88_13866 [Mikania micrantha] diamond 504 95.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Mikania Mikania micrantha
24028298 24028298 PRJNA385396_P_NODE_5859_length_345_cov_0.988971_g5767_i0 PRJNA385396 5859 345 0.988971 3.41194995 Drosera rotundifolia 173423 Plants Plants 157 9.78e-47   NR GAB2232939.1 173423 g5767 i0 69.6 44.7739130434783 112 34 97.4 0 338 3 9 120 GAB2232939.1 hypothetical protein Drorol1_Dr00012008 [Drosera rotundifolia] diamond 15447 157 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Caryophyllales Droseraceae Drosera Drosera rotundifolia
26600094 26600094 PRJNA385396_P_NODE_6701_length_329_cov_2.851562_g6609_i0 PRJNA385396 6701 329 2.851562 9.38163898 Nymphaea colorata 210225 Plants Plants 136 1.08e-38   NR VVW86319.1 210225 g6609 i0 60.2 3.93920972644377 108 43 98.5 0 328 5 4 111 VVW86319.1 unnamed protein product, partial [Nymphaea colorata] diamond 1296 136 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Nymphaeales Nymphaeaceae Nymphaea Nymphaea colorata
26680463 26680463 PRJNA385396_P_NODE_16481_length_247_cov_0.885057_g16389_i0 PRJNA385396 16481 247 0.885057 2.18609079 Magnoliopsida 3398 Plants Plants 80.9 1.43e-15   NR KAJ8639270.1 3435 g16389 i0 55.7 27.582995951417 70 31 85 0 6 215 226 295 KAJ8639270.1 hypothetical protein MRB53_015964 [Persea americana] diamond 6813 80.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Lauraceae Persea Persea americana
26917037 26917037 PRJNA385396_P_NODE_6482_length_333_cov_3.507692_g6390_i0 PRJNA385396 6482 333 3.507692 11.68061436 Rosa chinensis 74649 Plants Plants 79.3 5.93e-16   NR XP_024163700.1 74649 g6390 i0 55.6 0.648648648648649 72 25 63.1 3 6 215 94 160 XP_024163700.1 pathogenesis-related protein 1A [Rosa chinensis] diamond 216 79.3 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Rosa Rosa chinensis
27123350 27123350 PRJNA385396_P_NODE_2102_length_516_cov_1.652370_g2010_i0 PRJNA385396 2102 516 1.65237 8.5262292 Eukaryota 2759 Plants Plants 100 1.9099999999999998e-23   NR KAK7257792.1 3830 g2010 i0 54.3 20.0116279069767 105 48 61 0 67 381 27 131 KAK7257792.1 hypothetical protein RIF29_32024 [Crotalaria pallida] diamond 10326 101 0.99009900990099 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Crotalaria Crotalaria pallida
28022909 28022909 PRJNA385396_P_NODE_10965_length_274_cov_1.343284_g10873_i0 PRJNA385396 10965 274 1.343284 3.68059816 Zea mays 4577 Plants Plants 117 2.5299999999999993e-31   NR ACG27456.1 4577 g10873 i0 66.3 0.908759124087591 83 28 90.9 0 254 6 5 87 ACG27456.1 60 ribosomal protein L14 [Zea mays] diamond 249 117 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
28513235 28513235 PRJNA385396_P_NODE_2867_length_449_cov_2.018617_g2775_i0 PRJNA385396 2867 449 2.018617 9.06359033 Streptophyta 35493 Plants Plants 144 3.4199999999999993e-40   NR GAQ86255.1 105231 g2775 i0 55.6 39.2338530066815 142 59 94.9 3 4 429 1 138 GAQ86255.1 40S ribosomal protein S8 [Klebsormidium nitens] diamond 17616 144 1 Eukaryota   Viridiplantae Streptophyta Klebsormidiophyceae Klebsormidiales Klebsormidiaceae Klebsormidium Klebsormidium nitens
28780391 28780391 PRJNA385396_P_NODE_19947_length_243_cov_0.905882_g19855_i0 PRJNA385396 19947 243 0.905882 2.20129326 Acer negundo 4023 Plants Plants 94.4 2.5e-21   NR KAI9157559.1 4023 g19855 i0 60.8 0.975308641975309 79 29 95.1 1 233 3 52 130 KAI9157559.1 hypothetical protein LWI28_024396 [Acer negundo] diamond 237 94.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Sapindaceae Acer Acer negundo
29081654 29081654 PRJNA385396_P_NODE_5048_length_363_cov_1.058621_g4956_i0 PRJNA385396 5048 363 1.058621 3.84279423 Magnoliopsida 3398 Plants Plants 170 4.1e-50   NR TVU42949.1 38414 g4956 i0 70.6 92.4462809917355 119 35 98.3 0 5 361 132 250 TVU42949.1 hypothetical protein EJB05_09375, partial [Eragrostis curvula] diamond 33558 171 0.994152046783626 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Eragrostis Eragrostis curvula
29176484 29176484 PRJNA385396_P_NODE_6149_length_339_cov_1.684211_g6057_i0 PRJNA385396 6149 339 1.684211 5.70947529 Eukaryota 2759 Plants Plants 99 2.4399999999999999e-23   NR KDO83483.1 2711 g6057 i0 53 27.2212389380531 117 50 99.1 2 4 339 19 135 KDO83483.1 hypothetical protein CISIN_1g026785mg [Citrus sinensis] diamond 9228 99.4 0.995975855130785 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus sinensis
29870939 29870939 PRJNA385396_P_NODE_9071_length_295_cov_3.112613_g8979_i0 PRJNA385396 9071 295 3.112613 9.18220835 Eukaryota 2759 Plants Plants 123 3.2999999999999997e-32   NR GER34224.1 4170 g8979 i0 71.4 47.0949152542373 84 23 85.4 1 31 282 127 209 GER34224.1 60S ribosomal protein L6, partial [Striga asiatica] diamond 13893 124 0.991935483870968 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Orobanchaceae Striga Striga asiatica
30707053 30707053 PRJNA385396_P_NODE_11694_length_266_cov_1.595855_g11602_i0 PRJNA385396 11694 266 1.595855 4.2449743 Vigna angularis 3914 Plants Plants 50.8 5.62e-5   NR XP_017420281.1 3914 g11602 i0 52.6 0.428571428571429 38 17 41.7 1 261 151 28 65 XP_017420281.1 uncharacterized protein LOC108330301 [Vigna angularis] diamond 114 50.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Vigna Vigna angularis
31356176 31356176 PRJNA385396_P_NODE_11696_length_266_cov_1.595855_g11604_i0 PRJNA385396 11696 266 1.595855 4.2449743 Magnoliopsida 3398 Plants Plants 111 1.4500000000000002e-26   NR ACJ85622.1 3880 g11604 i0 58.1 23.2781954887218 86 36 97 0 9 266 238 323 ACJ85622.1 unknown, partial [Medicago truncatula] diamond 6192 112 0.991071428571429 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Medicago Medicago truncatula
31560788 31560788 PRJNA385396_P_NODE_18396_length_245_cov_0.895349_g18304_i0 PRJNA385396 18396 245 0.895349 2.19360505 Morus notabilis 981085 Plants Plants 72 1.84e-12   NR XP_010089424.1 981085 g18304 i0 46.9 1.98367346938776 81 42 99.2 1 1 243 127 206 XP_010089424.1 DEAD-box ATP-dependent RNA helicase 39 [Morus notabilis] diamond 486 72 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Moraceae Morus Morus notabilis
31703939 31703939 PRJNA385396_P_NODE_18117_length_245_cov_0.895349_g18025_i0 PRJNA385396 18117 245 0.895349 2.19360505 Magnoliopsida 3398 Plants Plants 121 1.3099999999999998e-31   NR RLN00394.1 4540 g18025 i0 78.5 84.2326530612245 79 17 96.7 0 237 1 94 172 RLN00394.1 40S ribosomal protein S9-2-like [Panicum miliaceum] diamond 20637 122 0.991803278688525 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Panicum Panicum miliaceum
31718750 31718750 PRJNA385396_P_NODE_15497_length_249_cov_0.875000_g15405_i0 PRJNA385396 15497 249 0.875 2.17875 Glycine max 3847 Plants Plants 72 8.87e-14   NR NP_001238097.1 3847 g15405 i0 46.3 1.59036144578313 80 41 94 1 247 14 58 137 NP_001238097.1 uncharacterized protein LOC100305878 [Glycine max] diamond 396 72 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
31893744 31893744 PRJNA385396_P_NODE_5977_length_342_cov_1.717472_g5885_i0 PRJNA385396 5977 342 1.717472 5.87375424 Eukaryota 2759 Plants Plants 95.5 2.32e-22   NR KAK7257792.1 3830 g5885 i0 59.3 12.9736842105263 86 35 75.4 0 78 335 27 112 KAK7257792.1 hypothetical protein RIF29_32024 [Crotalaria pallida] diamond 4437 95.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Crotalaria Crotalaria pallida
32887653 32887653 PRJNA385396_P_NODE_17660_length_246_cov_0.890173_g17568_i0 PRJNA385396 17660 246 0.890173 2.18982558 Ananas comosus 4615 Plants Plants 60.5 1.99e-8   NR XP_020089244.1 4615 g17568 i0 38.9 2.19512195121951 90 41 98.8 2 244 2 93 177 XP_020089244.1 fruit bromelain-like [Ananas comosus] diamond 540 60.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Bromeliaceae Ananas Ananas comosus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;