RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA385396" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA385396 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27281820 27281820 PRJNA385396_P_NODE_21703_length_241_cov_0.892857_g21611_i0 PRJNA385396 21703 241 0.892857 2.15178537 Eurotatoria 2816136 Rotifera other_Eukaryota 61.2 1.07e-8   NR CAF1136869.1 433720 g21611 i0 37.8 6.41078838174274 82 43 94.6 2 5 232 275 354 CAF1136869.1 unnamed protein product [Adineta steineri] diamond 1545 61.2 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta steineri
27787221 27787221 PRJNA385396_P_NODE_15204_length_249_cov_0.875000_g15112_i0 PRJNA385396 15204 249 0.875 2.17875 Opisthokonta 33154 Rotifera other_Eukaryota 47.4 6.31e-4   NR CAF1075029.1 249248 g15112 i0 40.5 6.62650602409639 74 44 89.2 0 237 16 120 193 CAF1075029.1 unnamed protein product [Adineta ricciae] diamond 1650 47.4 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
28545027 28545027 PRJNA385396_P_NODE_11887_length_264_cov_1.612565_g11795_i0 PRJNA385396 11887 264 1.612565 4.2571716 Rotaria 231623 Rotifera other_Eukaryota 98.2 1.36e-24   NR CAF4434995.1 392032 g11795 i0 58.8 9.09090909090909 80 33 90.9 0 19 258 5 84 CAF4434995.1 unnamed protein product, partial [Rotaria socialis] diamond 2400 98.2 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria socialis
30376833 30376833 PRJNA385396_P_NODE_19672_length_243_cov_0.905882_g19580_i0 PRJNA385396 19672 243 0.905882 2.20129326 Rotaria 231623 Rotifera other_Eukaryota 75.9 7.88e-14   NR CAF2245315.1 392030 g19580 i0 90.2 2.53086419753086 41 4 50.6 0 119 241 442 482 CAF2245315.1 unnamed protein product [Rotaria magnacalcarata] diamond 615 75.9 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria magnacalcarata
31339096 31339096 PRJNA385396_P_NODE_5176_length_360_cov_1.006969_g5084_i0 PRJNA385396 5176 360 1.006969 3.6250884 Asplanchna sp. 3231738 Rotifera other_Eukaryota 51.2 4.07e-5   NR XDF22621.1 3231738 g5084 i0 38.8 0.816666666666667 98 51 79.2 3 68 352 49 140 XDF22621.1 NADH dehydrogenase subunit 6 [Asplanchna sp.] diamond 294 51.2 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;