RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA385396" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA385396 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9335222 9335222 PRJNA385396_P_NODE_5508_length_353_cov_1.053571_g5416_i0 PRJNA385396 5508 353 1.053571 3.71910563 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 82 1.29e-15   NR AFD36233.1 5755 g5416 i0 54.3 0.594900849858357 70 32 59.5 0 212 3 69 138 AFD36233.1 protein kinase C4, partial [Acanthamoeba castellanii] diamond 210 82 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31371020 31371020 PRJNA385396_P_NODE_17996_length_245_cov_0.895349_g17904_i0 PRJNA385396 17996 245 0.895349 2.19360505 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 86.3 1.31e-17   NR XP_004336458.1 1257118 g17904 i0 53.8 0.795918367346939 65 27 79.6 1 17 211 22 83 XP_004336458.1 Aga27A, putative [Acanthamoeba castellanii str. Neff] diamond 195 86.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31781818 31781818 PRJNA385396_P_NODE_20977_length_241_cov_1.375000_g20885_i0 PRJNA385396 20977 241 1.375 3.31375 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 67 3.76e-11   NR XP_004340537.1 1257118 g20885 i0 41.6 0.95850622406639 77 43 93.4 1 233 9 46 122 XP_004340537.1 clavaldehyde dehydrogenase [Acanthamoeba castellanii str. Neff] diamond 231 67 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;