RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA385396" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJNA385396 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3627272 3627272 PRJNA385396_P_NODE_3023_length_439_cov_1.554645_g2931_i0 PRJNA385396 3023 439 1.554645 6.82489155 Eukaryota 2759 Plants Plants 116 1.93e-30   NR GAX85092.1 1157962 g2931 i0 51.7 7.3120728929385 118 52 79.3 2 405 58 11 125 GAX85092.1 hypothetical protein CEUSTIGMA_g12512.t1 [Chlamydomonas eustigma] diamond 3210 116 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
15709587 15709587 PRJNA385396_P_NODE_15753_length_248_cov_0.880000_g15661_i0 PRJNA385396 15753 248 0.88 2.1824 root 1 Root_unresolved Root_unresolved 89.4 6.5e-19   NR KAG7673501.1 1650286 g15661 i0 56.1 8.32258064516129 82 34 99.2 1 247 2 52 131 KAG7673501.1 hypothetical protein KSW81_006708 [Chlorella desiccata (nom. nud.)] diamond 2064 89.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
27233283 27233283 PRJNA385396_P_NODE_7423_length_319_cov_0.939024_g7331_i0 PRJNA385396 7423 319 0.939024 2.99548656 Raphidocelis subcapitata 307507 Plants Plants 78.6 9.88e-16   NR GBF87374.1 307507 g7331 i0 60.6 2.32288401253918 71 25 66.8 2 3 215 29 96 GBF87374.1 transcription factor BTF3 [Raphidocelis subcapitata] diamond 741 78.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata
29365796 29365796 PRJNA385396_P_NODE_18869_length_244_cov_0.900585_g18777_i0 PRJNA385396 18869 244 0.900585 2.1974274 Trebouxiaceae 2507902 Plants Plants 99.8 3.29e-22   NR KAK9807532.1 41462 g18777 i0 65.4 1.94262295081967 78 27 95.9 0 7 240 499 576 KAK9807532.1 hypothetical protein WJX72_001831 [[Myrmecia] bisecta] diamond 474 99.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
29934290 29934290 PRJNA385396_P_NODE_10851_length_275_cov_1.524752_g10759_i0 PRJNA385396 10851 275 1.524752 4.193068 Eukaryota 2759 Plants Plants 136 2.9e-37   NR PNH02768.1 47790 g10759 i0 69.7 3.91636363636364 89 27 97.1 0 272 6 91 179 PNH02768.1 60S ribosomal protein L5 [Tetrabaena socialis] diamond 1077 137 0.992700729927007 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Tetrabaenaceae Tetrabaena Tetrabaena socialis
31166019 31166019 PRJNA385396_P_NODE_16615_length_247_cov_0.885057_g16523_i0 PRJNA385396 16615 247 0.885057 2.18609079 Eukaryota 2759 Plants Plants 83.6 1.73e-16   NR CAD7704939.1 121088 g16523 i0 45.6 1.88259109311741 79 43 96 0 243 7 2488 2566 CAD7704939.1 unnamed protein product [Ostreobium quekettii] diamond 465 84.3 0.991696322657177 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
31482819 31482819 PRJNA385396_P_NODE_12136_length_262_cov_1.158730_g12044_i0 PRJNA385396 12136 262 1.15873 3.0358726 Sphaeropleales 35491 Plants Plants 105 1.29e-24   NR XP_013898465.1 145388 g12044 i0 58.3 2.88549618320611 84 35 96.2 0 9 260 209 292 XP_013898465.1 3-phosphoinositide dependent protein kinase 1 [Monoraphidium neglectum] diamond 756 106 0.990566037735849 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
32446668 32446668 PRJNA385396_P_NODE_14399_length_250_cov_0.870056_g14307_i0 PRJNA385396 14399 250 0.870056 2.17514 Monoraphidium minutum 39955 Plants Plants 47 0.00137   NR KAI8472293.1 39955 g14307 i0 37.2 1.824 78 48 93.6 1 250 17 971 1047 KAI8472293.1 MAG: hypothetical protein J3K34DRAFT_519907 [Monoraphidium minutum] diamond 456 47 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
32558477 32558477 PRJNA385396_P_NODE_20939_length_241_cov_1.833333_g20847_i0 PRJNA385396 20939 241 1.833333 4.41833253 Chlorophyta 3041 Plants Plants 85.5 3.22e-17   NR GBF89345.1 307507 g20847 i0 51.3 3.92116182572614 80 39 99.6 0 240 1 227 306 GBF89345.1 serine carboxypeptidase-like [Raphidocelis subcapitata] diamond 945 85.9 0.9953434225844 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;