RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA385073" and tax_phylum = "Thermoproteota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA385073 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28370025 28370025 PRJNA385073_P_NODE_8886_length_425_cov_2.025568_g8725_i0 PRJNA385073 8886 425 2.025568 8.608664 Thermoproteota archaeon 2056631 Archaea Archaea 206 1.07e-64   NR NLE05973.1 2056631 g8725 i0 75.4 0.945882352941177 134 33 94.6 0 3 404 83 216 NLE05973.1 PEP-CTERM sorting domain-containing protein [Thermoproteota archaeon] diamond 402 206 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
32478249 32478249 PRJNA385073_P_NODE_43419_length_250_cov_0.870056_g43257_i0 PRJNA385073 43419 250 0.870056 2.17514 Thermoproteota archaeon 2056631 Archaea Archaea 131 9.24e-38   NR MDI9578813.1 2056631 g43257 i0 83.8 0.816 68 11 81.6 0 205 2 1 68 MDI9578813.1 hypothetical protein [Thermoproteota archaeon] diamond 204 131 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;