RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA385073" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA385073 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31433961 31433961 PRJNA385073_P_NODE_42316_length_251_cov_0.865169_g42154_i0 PRJNA385073 42316 251 0.865169 2.17157419 Methanomassiliicoccales archaeon 1906667 Archaea Archaea 85.5 3.71e-17   NR TET91190.1 1906667 g42154 i0 54.5 0.920318725099602 77 35 92 0 232 2 606 682 TET91190.1 MAG: hypothetical protein E3J35_04240 [Methanomassiliicoccales archaeon] diamond 231 85.5 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon
32667294 32667294 PRJNA385073_P_NODE_56720_length_242_cov_0.911243_g56558_i0 PRJNA385073 56720 242 0.911243 2.20520806 Methanomassiliicoccales archaeon 1906667 Archaea Archaea 85.5 4.66e-18   NR MBI0581986.1 1906667 g56558 i0 58.8 0.991735537190083 80 33 99.2 0 241 2 159 238 MBI0581986.1 winged helix-turn-helix transcriptional regulator [Methanomassiliicoccales archaeon] diamond 240 85.5 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;