RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA385073" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA385073 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10609464 10609464 PRJNA385073_P_NODE_23389_length_302_cov_1.344978_g23227_i0 PRJNA385073 23389 302 1.344978 4.06183356 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 199 2.65e-60   NR RTG88961.1 6184 g23227 i0 94 504.586092715232 100 6 99.3 0 301 2 196 295 RTG88961.1 tubulin beta [Schistosoma bovis] diamond 152385 201 0.990049751243781 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma bovis
32256934 32256934 PRJNA385073_P_NODE_52898_length_244_cov_1.654971_g52736_i0 PRJNA385073 52898 244 1.654971 4.03812924 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 99.4 1.66e-22   NR PAA83354.1 282301 g52736 i0 92 0.614754098360656 50 4 61.5 0 152 3 240 289 PAA83354.1 hypothetical protein BOX15_Mlig030284g2 [Macrostomum lignano] diamond 150 99.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;