RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA385073" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA385073 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27991307 27991307 PRJNA385073_P_NODE_56925_length_242_cov_0.911243_g56763_i0 PRJNA385073 56925 242 0.911243 2.20520806 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 54.3 2.83e-6   NR KAF0692643.1 120398 g56763 i0 43.1 0.632231404958678 51 29 63.2 0 27 179 266 316 KAF0692643.1 hypothetical protein As57867_016225 [Aphanomyces stellatus] diamond 153 54.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
28418723 28418723 PRJNA385073_P_NODE_15886_length_345_cov_1.970588_g15725_i0 PRJNA385073 15886 345 1.970588 6.7985286 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 146 2.3299999999999993e-40   NR GLE02349.1 114742 g15725 i0 63.2 11.8434782608696 114 40 97.4 1 337 2 25 138 GLE02349.1 hypothetical protein PINS_up011187 [Pythium insidiosum] diamond 4086 146 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;