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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA385073" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA385073 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4904306 4904306 PRJNA385073_P_NODE_45024_length_249_cov_0.875000_g44862_i0 PRJNA385073 45024 249 0.875 2.17875 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 156 1.03e-44   NR NLD26715.1 1898209 g44862 i0 100 0.987951807228916 82 0 98.8 0 248 3 104 185 NLD26715.1 recombinase RecA [Acholeplasmataceae bacterium] diamond 246 156 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
28811789 28811789 PRJNA385073_P_NODE_58708_length_241_cov_0.916667_g58546_i0 PRJNA385073 58708 241 0.916667 2.20916747 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 61.2 4.69e-10   NR HHX81178.1 1898209 g58546 i0 48.2 1.03319502074689 83 38 97.1 4 6 239 5 87 HHX81178.1 hypothetical protein [Acholeplasmataceae bacterium] diamond 249 61.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
30328493 30328493 PRJNA385073_P_NODE_41472_length_251_cov_0.865169_g41310_i0 PRJNA385073 41472 251 0.865169 2.17157419 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 149 4.3099999999999997e-42   NR NLD26166.1 1898209 g41310 i0 100 0.99203187250996006 83 0 99.2 0 3 251 162 244 NLD26166.1 hypothetical protein [Acholeplasmataceae bacterium] diamond 249 149 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
31023092 31023092 PRJNA385073_P_NODE_51615_length_245_cov_0.895349_g51453_i0 PRJNA385073 51615 245 0.895349 2.19360505 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 165 1.7099999999999997e-46   NR NLD25996.1 1898209 g51453 i0 100 0.991836734693878 81 0 99.2 0 245 3 357 437 NLD25996.1 L-glutamate gamma-semialdehyde dehydrogenase [Acholeplasmataceae bacterium] diamond 243 165 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
31054955 31054955 PRJNA385073_P_NODE_44935_length_249_cov_0.875000_g44773_i0 PRJNA385073 44935 249 0.875 2.17875 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 163 7.249999999999999e-48   NR NLD27072.1 1898209 g44773 i0 100 1 83 0 100 0 1 249 56 138 NLD27072.1 thymidine phosphorylase [Acholeplasmataceae bacterium] diamond 249 163 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
31212209 31212209 PRJNA385073_P_NODE_45535_length_249_cov_0.875000_g45373_i0 PRJNA385073 45535 249 0.875 2.17875 Tenericutes bacterium GWA2_35_7 1802344 Bacteria Bacteria 42.4 0.0499   NR OHE25659.1 1802344 g45373 i0 53.8 0.469879518072289 39 18 47 0 241 125 231 269 OHE25659.1 MAG: acetyl-CoA carboxylase carboxyltransferase subunit alpha [Tenericutes bacterium GWA2_35_7] diamond 117 42.4 1 Bacteria   Bacillati Mycoplasmatota         Tenericutes bacterium GWA2_35_7
31402596 31402596 PRJNA385073_P_NODE_56796_length_242_cov_0.911243_g56634_i0 PRJNA385073 56796 242 0.911243 2.20520806 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 121 7.92e-30   NR NLH46452.1 1898209 g56634 i0 96.7 0.756198347107438 61 2 75.6 0 1 183 610 670 NLH46452.1 ferrous iron transport protein B [Acholeplasmataceae bacterium] diamond 183 121 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
32098300 32098300 PRJNA385073_P_NODE_43138_length_250_cov_0.870056_g42976_i0 PRJNA385073 43138 250 0.870056 2.17514 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 100 3.669999999999999e-24   NR NLD27130.1 1898209 g42976 i0 100 0.576 48 0 57.6 0 248 105 94 141 NLD27130.1 serine hydroxymethyltransferase [Acholeplasmataceae bacterium] diamond 144 100 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
32414906 32414906 PRJNA385073_P_NODE_55859_length_243_cov_0.905882_g55697_i0 PRJNA385073 55859 243 0.905882 2.20129326 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 150 4.6999999999999985e-43   NR NLD26488.1 1898209 g55697 i0 95.1 1 81 4 100 0 1 243 105 185 NLD26488.1 sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein [Acholeplasmataceae bacterium] diamond 243 150 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
32667289 32667289 PRJNA385073_P_NODE_50320_length_246_cov_0.890173_g50158_i0 PRJNA385073 50320 246 0.890173 2.18982558 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 62 2.04e-9   NR NLU44157.1 1898209 g50158 i0 76.9 0.475609756097561 39 9 47.6 0 245 129 166 204 NLU44157.1 TetR/AcrR family transcriptional regulator [Acholeplasmataceae bacterium] diamond 117 62 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
32856223 32856223 PRJNA385073_P_NODE_43440_length_250_cov_0.870056_g43278_i0 PRJNA385073 43440 250 0.870056 2.17514 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 164 1.01e-49   NR NLD26848.1 1898209 g43278 i0 100 0.996 83 0 99.6 0 1 249 52 134 NLD26848.1 AAA domain-containing protein [Acholeplasmataceae bacterium] diamond 249 164 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;