RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA385073" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA385073 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28591175 28591175 PRJNA385073_P_NODE_3187_length_643_cov_2.801754_g3033_i0 PRJNA385073 3187 643 2.801754 18.01527822 Longimicrobium sp. 2029185 Bacteria Bacteria 92.8 8.77e-19   NR HEX6372403.1 2029185 g3033 i0 49.1 2.65940902021773 114 57 52.7 1 139 477 135 248 HEX6372403.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 1710 92.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
28717489 28717489 PRJNA385073_P_NODE_747_length_1157_cov_2.250923_g661_i0 PRJNA385073 747 1157 2.250923 26.04317911 Longimicrobium sp. 2029185 Bacteria Bacteria 97.4 4.64e-19   NR HEX2210215.1 2029185 g661 i0 47.4 0.627484874675886 114 59 29.3 1 539 877 135 248 HEX2210215.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 726 97.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30738609 30738609 PRJNA385073_P_NODE_33994_length_268_cov_1.579487_g33832_i0 PRJNA385073 33994 268 1.579487 4.23302516 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 110 9.95e-26   NR HXE57534.1 2448054 g33832 i0 61.4 3.94029850746269 88 34 98.5 0 3 266 341 428 HXE57534.1 S9 family peptidase [Gemmatimonadales bacterium] diamond 1056 110 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31197496 31197496 PRJNA385073_P_NODE_29655_length_280_cov_1.468599_g29493_i0 PRJNA385073 29655 280 1.468599 4.1120772 FCB group 1783270 Bacteria Bacteria 44.3 0.015   NR WP_331124048.1 2029185 g29493 i0 62.5 1.5 32 12 34.3 0 103 8 137 168 WP_331124048.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 420 44.7 0.991051454138702 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32526908 32526908 PRJNA385073_P_NODE_59319_length_241_cov_0.916667_g59157_i0 PRJNA385073 59319 241 0.916667 2.20916747 Bacteria 2 Bacteria Bacteria 139 2.9799999999999996e-37   NR MFV1987378.1 2026742 g59157 i0 87.3 5.88796680497925 79 10 98.3 0 3 239 26 104 MFV1987378.1 MATE family efflux transporter [Gemmatimonadota bacterium] diamond 1419 139 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32887636 32887636 PRJNA385073_P_NODE_4300_length_567_cov_1.350202_g4144_i0 PRJNA385073 4300 567 1.350202 7.65564534 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 82.4 4.1e-15   NR MBA2670349.1 2026742 g4144 i0 44.9 2.61904761904762 89 47 47.1 1 3 269 187 273 MBA2670349.1 DUF2382 domain-containing protein [Gemmatimonadota bacterium] diamond 1485 82.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;