RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA385073" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA385073 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5510272 5510272 PRJNA385073_P_NODE_62985_length_226_cov_2.013072_g62823_i0 PRJNA385073 62985 226 2.013072 4.54954272 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 110 5.79e-28   NR QLA09565.1 3039 g62823 i0 68.9 5.8938053097345096 74 23 98.2 0 222 1 123 196 QLA09565.1 40S small subunit ribosomal protein uS3 [Euglena gracilis] diamond 1332 110 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
28149150 28149150 PRJNA385073_P_NODE_13165_length_368_cov_1.566102_g13004_i0 PRJNA385073 13165 368 1.566102 5.76325536 Trypanosoma grayi 71804 Euglenozoa other_Eukaryota 53.5 8.14e-6   NR XP_009314629.1 71804 g13004 i0 37.2 0.701086956521739 86 50 69.3 2 3 257 1 83 XP_009314629.1 Smr domain containing protein, partial [Trypanosoma grayi] diamond 258 53.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma grayi
31577532 31577532 PRJNA385073_P_NODE_29716_length_280_cov_1.140097_g29554_i0 PRJNA385073 29716 280 1.140097 3.1922716 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 160 2.4699999999999994e-48   NR XP_809534.1 5693 g29554 i0 75.3 4.76785714285714 89 22 95.4 0 268 2 29 117 XP_809534.1 hypothetical protein, conserved [Trypanosoma cruzi] diamond 1335 160 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;