RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA385073" and tax_phylum = "Deinococcota"

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tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA385073 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20807751 20807751 PRJNA385073_P_NODE_44837_length_249_cov_0.875000_g44675_i0 PRJNA385073 44837 249 0.875 2.17875 Deinococcales bacterium 2478479 Bacteria Bacteria 142 1.15e-40   NR HLR47222.1 2478479 g44675 i0 81.7 0.987951807228916 82 15 98.8 0 248 3 97 178 HLR47222.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD [Deinococcales bacterium] diamond 246 142 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales     Deinococcales bacterium
26853933 26853933 PRJNA385073_P_NODE_41681_length_251_cov_0.865169_g41519_i0 PRJNA385073 41681 251 0.865169 2.17157419 Deinococcus antarcticus 1298767 Bacteria Bacteria 169 3.1099999999999995e-48   NR WP_380079479.1 1298767 g41519 i0 100 0.99203187250996006 83 0 99.2 0 250 2 103 185 WP_380079479.1 phytoene desaturase family protein [Deinococcus antarcticus] diamond 249 169 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus
28275231 28275231 PRJNA385073_P_NODE_60406_length_236_cov_5.233129_g60244_i0 PRJNA385073 60406 236 5.233129 12.35018444 Deinococcus ficus 317577 Bacteria Bacteria 71.6 7.26e-13   NR WP_027464402.1 317577 g60244 i0 56 0.953389830508475 75 33 95.3 0 226 2 7 81 WP_027464402.1 hypothetical protein [Deinococcus ficus] diamond 225 71.6 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
30738611 30738611 PRJNA385073_P_NODE_37134_length_260_cov_2.497326_g36972_i0 PRJNA385073 37134 260 2.497326 6.4930476 Deinococcus ficus 317577 Bacteria Bacteria 66.6 1.56e-10   NR WP_027463859.1 317577 g36972 i0 51.3 0.923076923076923 80 22 72.7 1 68 256 243 322 WP_027463859.1 sensor domain-containing diguanylate cyclase [Deinococcus ficus] diamond 240 66.6 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;