RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA385073" and tax_phylum = "Candidatus Binatota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Binatota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA385073 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16983654 16983654 PRJNA385073_P_NODE_49634_length_246_cov_0.890173_g49472_i0 PRJNA385073 49634 246 0.890173 2.18982558 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 73.2 2.56e-13   NR HEV7734552.1 2838779 g49472 i0 79.5 0.536585365853659 44 9 53.7 0 132 1 1 44 HEV7734552.1 crotonase/enoyl-CoA hydratase family protein [Candidatus Binatia bacterium] diamond 132 73.2 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
29538233 29538233 PRJNA385073_P_NODE_61930_length_230_cov_2.146497_g61768_i0 PRJNA385073 61930 230 2.146497 4.9369431 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 113 1.43e-27   NR HJY83707.1 2838779 g61768 i0 81.7 0.782608695652174 60 11 78.3 0 1 180 239 298 HJY83707.1 group II intron reverse transcriptase/maturase [Candidatus Binatia bacterium] diamond 180 113 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
31371005 31371005 PRJNA385073_P_NODE_32936_length_271_cov_1.282828_g32774_i0 PRJNA385073 32936 271 1.282828 3.47646388 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 119 8.160000000000001e-29   NR MFN8643327.1 2838779 g32774 i0 63.4 0.907749077490775 82 30 90.8 0 6 251 686 767 MFN8643327.1 hypothetical protein [Candidatus Binatia bacterium] diamond 246 119 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
31497470 31497470 PRJNA385073_P_NODE_42356_length_251_cov_0.865169_g42194_i0 PRJNA385073 42356 251 0.865169 2.17157419 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 79 6.89e-15   NR HEX2230455.1 2838779 g42194 i0 38.1 1.00398406374502 84 50 99.2 2 250 2 332 414 HEX2230455.1 carotenoid oxygenase family protein [Candidatus Binatia bacterium] diamond 252 79 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;