RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA385073" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA385073 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27471413 27471413 PRJNA385073_P_NODE_28563_length_283_cov_1.404762_g28401_i0 PRJNA385073 28563 283 1.404762 3.97547646 Bacteria 2 Bacteria Bacteria 140 4.939999999999999e-37   NR PIR23450.1 1973974 g28401 i0 72.3 1.99293286219081 94 26 99.6 0 283 2 48 141 PIR23450.1 MAG: aldehyde dehydrogenase [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_45_16] diamond 564 140 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_45_16
27959555 27959555 PRJNA385073_P_NODE_42245_length_251_cov_0.865169_g42083_i0 PRJNA385073 42245 251 0.865169 2.17157419 Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_ 2026735 Bacteria Bacteria 55.1 1.83e-6   NR PIR22332.1 1973974 g42083 i0 39.8 0.99203187250996006 83 48 96.8 1 8 250 160 242 PIR22332.1 MAG: hypothetical protein COV44_08485 [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_45_16] diamond 249 55.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_45_16
28197351 28197351 PRJNA385073_P_NODE_34686_length_266_cov_2.238342_g34524_i0 PRJNA385073 34686 266 2.238342 5.95398972 Bdellovibrionota 3018035 Bacteria Bacteria 135 1.2499999999999999e-34   NR PIR23042.1 1973974 g34524 i0 75 2.94360902255639 88 22 99.2 0 265 2 190 277 PIR23042.1 MAG: penicillin-binding protein [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_45_16] diamond 783 135 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_45_16
32841539 32841539 PRJNA385073_P_NODE_54620_length_243_cov_1.747059_g54458_i0 PRJNA385073 54620 243 1.747059 4.24535337 Bdellovibrionota 3018035 Bacteria Bacteria 100 1.72e-22   NR PIR22591.1 1973974 g54458 i0 63.8 1.97530864197531 80 22 98.8 1 2 241 336 408 PIR22591.1 MAG: molecular chaperone DnaK [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_45_16] diamond 480 101 0.99009900990099 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_45_16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;