RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA385073" and tax_clade = "Stenosarchaea group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 12 ✖

bioproject 1

  • PRJNA385073 · 12 ✖

analysis 1

  • diamond · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2957057 2957057 PRJNA385073_P_NODE_55643_length_243_cov_0.905882_g55481_i0 PRJNA385073 55643 243 0.905882 2.20129326 Methanofollis ethanolicus 488124 Archaea Archaea 150 3.209999999999999e-43   NR WP_067049206.1 488124 g55481 i0 97.5 0.987654320987654 80 2 98.8 0 241 2 130 209 WP_067049206.1 translation initiation factor IF-2 subunit alpha [Methanofollis ethanolicus] diamond 240 150 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis ethanolicus
22082680 22082680 PRJNA385073_P_NODE_49858_length_246_cov_0.890173_g49696_i0 PRJNA385073 49858 246 0.890173 2.18982558 Methanospirillum sp. 45200 Archaea Archaea 132 4.62e-35   NR MEN6341541.1 45200 g49696 i0 79 1.98780487804878 81 17 98.8 0 244 2 149 229 MEN6341541.1 hypothetical protein [Methanospirillum sp.] diamond 489 132 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanospirillaceae Methanospirillum Methanospirillum sp.
26632032 26632032 PRJNA385073_P_NODE_42441_length_251_cov_0.865169_g42279_i0 PRJNA385073 42441 251 0.865169 2.17157419 Methanoregulaceae archaeon 2485498 Archaea Archaea 140 2.02e-40   NR HIH02966.1 2485498 g42279 i0 84.3 0.99203187250996006 83 13 99.2 0 2 250 77 159 HIH02966.1 Hsp20/alpha crystallin family protein [Methanoregulaceae archaeon] diamond 249 140 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon
27675704 27675704 PRJNA385073_P_NODE_46724_length_248_cov_0.880000_g46562_i0 PRJNA385073 46724 248 0.88 2.1824 Methanosarcina sp. UBA411 1915589 Archaea Archaea 158 5.55e-45   NR WP_292374803.1 1915589 g46562 i0 95.1 0.991935483870968 82 4 99.2 0 246 1 98 179 WP_292374803.1 hypothetical protein [Methanosarcina sp. UBA411] diamond 246 158 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. UBA411
28496503 28496503 PRJNA385073_P_NODE_44067_length_250_cov_0.870056_g43905_i0 PRJNA385073 44067 250 0.870056 2.17514 Methanoculleus sp. 1 90427 Archaea Archaea 102 2.96e-23   NR WP_292489426.1 430615 g43905 i0 67.1 0.984 82 26 97.2 1 3 245 679 760 WP_292489426.1 SwmB domain-containing protein [Methanoculleus sp. 10] diamond 246 102 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus sp. 10
28528140 28528140 PRJNA385073_P_NODE_55627_length_243_cov_0.905882_g55465_i0 PRJNA385073 55627 243 0.905882 2.20129326 Methanothrix soehngenii 2223 Archaea Archaea 114 2.4599999999999996e-29   NR WP_013719891.1 2223 g55465 i0 65.9 1.08641975308642 88 22 98.8 1 241 2 20 107 WP_013719891.1 tetratricopeptide repeat protein [Methanothrix soehngenii] diamond 264 114 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
30282041 30282041 PRJNA385073_P_NODE_11452_length_387_cov_1.353503_g11291_i0 PRJNA385073 11452 387 1.353503 5.23805661 Methanothrix 2222 Archaea Archaea 254 3.59e-81   NR WP_324308066.1 2223 g11291 i0 98.4 1.98449612403101 128 2 99.2 0 386 3 82 209 WP_324308066.1 type I restriction endonuclease, partial [Methanothrix soehngenii] diamond 768 254 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
31180709 31180709 PRJNA385073_P_NODE_50615_length_246_cov_0.890173_g50453_i0 PRJNA385073 50615 246 0.890173 2.18982558 Methanofastidiosum sp. 2666341 Archaea Archaea 84.7 7.92e-19   NR HNU62030.1 2666341 g50453 i0 67.7 1.51219512195122 62 20 75.6 0 60 245 1 62 HNU62030.1 deaminase [Methanofastidiosum sp.] diamond 372 84.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Candidatus Methanofastidiosia Candidatus Methanofastidiosales Candidatus Methanofastidiosaceae Candidatus Methanofastidiosum Methanofastidiosum sp.
31433965 31433965 PRJNA385073_P_NODE_52436_length_245_cov_0.895349_g52274_i0 PRJNA385073 52436 245 0.895349 2.19360505 Methanothrix soehngenii 2223 Archaea Archaea 175 3.88e-49   NR WP_287848715.1 2223 g52274 i0 100 3.96734693877551 81 0 99.2 0 244 2 521 601 WP_287848715.1 CHAT domain-containing protein [Methanothrix soehngenii] diamond 972 175 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
31750188 31750188 PRJNA385073_P_NODE_46877_length_248_cov_0.880000_g46715_i0 PRJNA385073 46877 248 0.88 2.1824 Methanosaeta sp. PtaU1.Bin112 1811689 Archaea Archaea 161 8.76e-44   NR OPY56055.1 1811689 g46715 i0 96.3 0.991935483870968 82 3 99.2 0 1 246 767 848 OPY56055.1 MAG: type I restriction enzyme EcoKI subunit R [Methanosaeta sp. PtaU1.Bin112] diamond 246 161 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. PtaU1.Bin112
31971710 31971710 PRJNA385073_P_NODE_16558_length_340_cov_2.883895_g16397_i0 PRJNA385073 16558 340 2.883895 9.805243 Methanothrix sp. 90426 Archaea Archaea 69.7 9.99e-13   NR MDD1750004.1 90426 g16397 i0 67.4 0.405882352941176 46 15 40.6 0 184 47 63 108 MDD1750004.1 hypothetical protein [Methanothrix sp.] diamond 138 69.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
32273632 32273632 PRJNA385073_P_NODE_41918_length_251_cov_0.865169_g41756_i0 PRJNA385073 41918 251 0.865169 2.17157419 Stenosarchaea group 2290931 Archaea Archaea 116 1.44e-28   NR HPE52240.1 2223 g41756 i0 79.7 1.66135458167331 69 14 82.5 0 1 207 393 461 HPE52240.1 DUF2207 domain-containing protein [Methanothrix soehngenii] diamond 417 117 0.991452991452991 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;