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contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJNA385064" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 15 ✖

tax_kingdom 1

bioproject 1

  • PRJNA385064 · 15 ✖

analysis 1

  • diamond · 15 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8728568 8728568 PRJNA385064_P_NODE_7307_length_164_cov_0.886957_g7182_i0 PRJNA385064 7307 164 0.886957 1.45460948 Corynebacterium striatum 43770 Bacteria Bacteria 114 2.97e-30   NR WP_080969961.1 43770 g7182 i0 100 0.98780487804878 54 0 98.8 0 162 1 95 148 WP_080969961.1 PIN domain-containing protein [Corynebacterium striatum] diamond 162 114 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium striatum
26885511 26885511 PRJNA385064_P_NODE_3881_length_220_cov_2.578947_g3756_i0 PRJNA385064 3881 220 2.578947 5.6736834 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 46.2 0.00168   NR MFQ5554000.1 2080302 g3756 i0 44.6 0.886363636363636 65 31 81.8 2 34 213 90 154 MFQ5554000.1 hypothetical protein [Acidimicrobiia bacterium] diamond 195 46.2 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
27454592 27454592 PRJNA385064_P_NODE_3223_length_244_cov_1.307692_g3098_i0 PRJNA385064 3223 244 1.307692 3.19076848 Georgenia sp. 1873458 Bacteria Bacteria 107 7.51e-26   NR HLT85933.1 1873458 g3098 i0 56.8 0.995901639344262 81 35 99.6 0 244 2 126 206 HLT85933.1 hypothetical protein [Georgenia sp.] diamond 243 107 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Bogoriellaceae Georgenia Georgenia sp.
27580614 27580614 PRJNA385064_P_NODE_7384_length_164_cov_0.886957_g7259_i0 PRJNA385064 7384 164 0.886957 1.45460948 Pseudactinotalea sp. HY158 2654547 Bacteria Bacteria 46.6 5.52e-4   NR WP_194928858.1 2654547 g7259 i0 84.6 0.475609756097561 26 4 47.6 0 148 71 360 385 WP_194928858.1 glycerate kinase [Pseudactinotalea sp. HY158] diamond 78 46.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Pseudactinotalea Pseudactinotalea sp. HY158
28117323 28117323 PRJNA385064_P_NODE_3025_length_253_cov_1.000000_g2900_i0 PRJNA385064 3025 253 1 2.53 uncultured Actinomyces sp. 249061 Bacteria Bacteria 129 3.1500000000000004e-36   NR WP_311470439.1 249061 g2900 i0 96.9 0.770750988142292 65 2 77.1 0 253 59 83 147 WP_311470439.1 hypothetical protein [uncultured Actinomyces sp.] diamond 195 129 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces uncultured Actinomyces sp.
28338514 28338514 PRJNA385064_P_NODE_4786_length_196_cov_1.278912_g4661_i0 PRJNA385064 4786 196 1.278912 2.50666752 Eggerthellaceae bacterium 1972561 Bacteria Bacteria 43.1 0.015   NR MBQ2681247.1 1972561 g4661 i0 45 0.612244897959184 40 22 61.2 0 4 123 659 698 MBQ2681247.1 sulfatase-like hydrolase/transferase [Eggerthellaceae bacterium] diamond 120 43.1 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae   Eggerthellaceae bacterium
28528110 28528110 PRJNA385064_P_NODE_7647_length_163_cov_0.859649_g7522_i0 PRJNA385064 7647 163 0.859649 1.40122787 Propionicimonas paludicola 185243 Bacteria Bacteria 95.9 3.9e-22   NR WP_098461678.1 185243 g7522 i0 86.8 0.975460122699387 53 7 97.5 0 162 4 173 225 WP_098461678.1 dihydropteroate synthase [Propionicimonas paludicola] diamond 159 95.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Propionicimonas Propionicimonas paludicola
28748923 28748923 PRJNA385064_P_NODE_6867_length_166_cov_0.871795_g6742_i0 PRJNA385064 6867 166 0.871795 1.4471797 Lawsonella clevelandensis 1528099 Bacteria Bacteria 117 1.06e-29   NR WP_394268102.1 1528099 g6742 i0 98.2 0.993975903614458 55 1 99.4 0 2 166 237 291 WP_394268102.1 AMP-binding protein [Lawsonella clevelandensis] diamond 165 117 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
29885779 29885779 PRJNA385064_P_NODE_6411_length_168_cov_0.705882_g6286_i0 PRJNA385064 6411 168 0.705882 1.18588176 Paractinoplanes bogorensis 1610840 Bacteria Bacteria 42 0.0264   NR WP_215790945.1 1610840 g6286 i0 40 0.982142857142857 55 33 98.2 0 165 1 252 306 WP_215790945.1 sigma-54-dependent Fis family transcriptional regulator [Paractinoplanes bogorensis] diamond 165 42 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Paractinoplanes Paractinoplanes bogorensis
30043505 30043505 PRJNA385064_P_NODE_6571_length_167_cov_0.864407_g6446_i0 PRJNA385064 6571 167 0.864407 1.44355969 Micromonospora sp. WMMD11 1876 Bacteria Bacteria 78.2 1.83e-15   NR WP_278060642.1 3016105 g6446 i0 66.7 2.89221556886228 54 18 97 0 165 4 194 247 WP_278060642.1 hypothetical protein [Micromonospora sp. WMMD1102] diamond 483 78.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. WMMD1102
30517511 30517511 PRJNA385064_P_NODE_3733_length_225_cov_1.073864_g3608_i0 PRJNA385064 3733 225 1.073864 2.416194 Gaiellaceae bacterium 2838783 Bacteria Bacteria 40 0.0493   NR HVW90608.1 2838783 g3608 i0 43.1 0.68 51 25 65.3 2 9 155 22 70 HVW90608.1 hypothetical protein [Gaiellaceae bacterium] diamond 153 40 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae   Gaiellaceae bacterium
30991542 30991542 PRJNA385064_P_NODE_5854_length_176_cov_0.976378_g5729_i0 PRJNA385064 5854 176 0.976378 1.71842528 Nocardioides sp. 35761 Bacteria Bacteria 41.2 0.0477   NR HEU4811850.1 35761 g5729 i0 43.6 0.9375 55 27 86.9 1 11 163 70 124 HEU4811850.1 5-formyltetrahydrofolate cyclo-ligase [Nocardioides sp.] diamond 165 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp.
31971704 31971704 PRJNA385064_P_NODE_6658_length_167_cov_0.864407_g6533_i0 PRJNA385064 6658 167 0.864407 1.44355969 uncultured Corynebacterium sp. 159447 Bacteria Bacteria 106 5.3e-26   NR WP_293791152.1 159447 g6533 i0 92.7 0.988023952095808 55 4 98.8 0 3 167 15 69 WP_293791152.1 HAD-IIA family hydrolase [uncultured Corynebacterium sp.] diamond 165 106 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium uncultured Corynebacterium sp.
32193329 32193329 PRJNA385064_P_NODE_6598_length_167_cov_0.864407_g6473_i0 PRJNA385064 6598 167 0.864407 1.44355969 Lawsonella 1847725 Bacteria Bacteria 113 5.63e-28   NR WP_290595325.1 1847725 g6473 i0 100 0.988023952095808 55 0 98.8 0 166 2 131 185 WP_290595325.1 MULTISPECIES: class I SAM-dependent RNA methyltransferase [Lawsonella] diamond 165 113 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella  
32761820 32761820 PRJNA385064_P_NODE_7840_length_162_cov_0.902655_g7715_i0 PRJNA385064 7840 162 0.902655 1.4623011 Actinomycetota bacterium 2900548 Bacteria Bacteria 115 4.22e-28   NR GHT86527.1 2900548 g7715 i0 98.1 1 54 1 100 0 1 162 179 232 GHT86527.1 multifunctional 2-oxoglutarate metabolism enzyme [Actinomycetota bacterium] diamond 162 115 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;