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contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJNA384462" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA384462 · 32 ✖

analysis 1

  • diamond · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6178852 6178852 PRJNA384462_S_NODE_5165_length_237_cov_0.930851_g5049_i0 PRJNA384462 5165 237 0.930851 2.20611687 Chordata 7711 Chordata Chordata 108 2.6e-26   NR XP_053578130.1 8345 g5049 i0 78.8 5.0126582278481 66 14 83.5 0 1 198 268 333 XP_053578130.1 glyceraldehyde-3-phosphate dehydrogenase [Bombina bombina] diamond 1188 108 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
10609155 10609155 PRJNA384462_S_NODE_9409_length_188_cov_1.093525_g9293_i0 PRJNA384462 9409 188 1.093525 2.055827 Styela clava 7725 Chordata Chordata 113 2.6900000000000003e-27   NR XP_039248064.1 7725 g9293 i0 80.6 0.98936170212766 62 12 98.9 0 188 3 202 263 XP_039248064.1 nucleolar GTP-binding protein 2-like [Styela clava] diamond 186 113 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
10609156 10609156 PRJNA384462_S_NODE_9489_length_187_cov_1.673913_g9373_i0 PRJNA384462 9489 187 1.673913 3.13021731 Smutsia gigantea 1559511 Chordata Chordata 65.1 2.8e-11   NR KAK2493259.1 1559511 g9373 i0 54.1 15.6096256684492 61 25 97.9 1 4 186 57 114 KAK2493259.1 hypothetical protein MC885_019467 [Smutsia gigantea] diamond 2919 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Smutsia Smutsia gigantea
15103675 15103675 PRJNA384462_S_NODE_6432_length_217_cov_1.208333_g6316_i0 PRJNA384462 6432 217 1.208333 2.62208261 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 115 4.06e-28   NR XP_035692392.1 7739 g6316 i0 69 7.71428571428571 71 22 98.2 0 215 3 342 412 XP_035692392.1 deoxyribodipyrimidine photo-lyase-like [Branchiostoma floridae] diamond 1674 116 0.991379310344828 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
17653455 17653455 PRJNA384462_S_NODE_734_length_589_cov_5.259259_g633_i0 PRJNA384462 734 589 5.259259 30.97703551 Metazoa 33208 Chordata Chordata 215 9.54e-65   NR XP_069503785.1 8296 g633 i0 71.7 62.6689303904924 159 39 81 1 583 107 272 424 XP_069503785.1 3-ketoacyl-CoA thiolase, peroxisomal [Ambystoma mexicanum] diamond 36912 216 0.99537037037037 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
18256855 18256855 PRJNA384462_S_NODE_4575_length_249_cov_2.505000_g4459_i0 PRJNA384462 4575 249 2.505 6.23745 Mammalia 40674 Chordata Chordata 122 2.65e-33   NR CAA65760.1 9913 g4459 i0 68.3 12.7710843373494 82 24 98.8 1 247 2 43 122 CAA65760.1 ORF, partial [Bos taurus] diamond 3180 122 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
22081751 22081751 PRJNA384462_S_NODE_1078_length_498_cov_2.000000_g963_i0 PRJNA384462 1078 498 2 9.96 Branchiostoma floridae 7739 Chordata Chordata 266 1.05e-83   NR XP_035674512.1 7739 g963 i0 79.4 23.855421686747 165 34 99.4 0 496 2 317 481 XP_035674512.1 inositol-3-phosphate synthase 1-A-like [Branchiostoma floridae] diamond 11880 266 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
26663356 26663356 PRJNA384462_S_NODE_13621_length_165_cov_0.887931_g13505_i0 PRJNA384462 13621 165 0.887931 1.46508615 Hyla sarda 327740 Chordata Chordata 42 0.0234   NR XP_056417131.1 327740 g13505 i0 50 1.6 44 22 80 0 149 18 26 69 XP_056417131.1 uncharacterized protein LOC130358228 isoform X2 [Hyla sarda] diamond 264 42 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
27201391 27201391 PRJNA384462_S_NODE_6262_length_219_cov_1.523529_g6146_i0 PRJNA384462 6262 219 1.523529 3.33652851 Erpetoichthys calabaricus 27687 Chordata Chordata 66.6 8.5e-11   NR XP_051791274.1 27687 g6146 i0 71.4 4.02739726027397 49 13 65.8 1 19 162 156 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 882 67 0.994029850746269 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
27485991 27485991 PRJNA384462_S_NODE_583_length_643_cov_1.698653_g492_i0 PRJNA384462 583 643 1.698653 10.92233879 Latimeria chalumnae 7897 Chordata Chordata 55.5 3.77e-5   NR XP_006012969.1 7897 g492 i0 39 0.382581648522551 82 41 38.3 2 1 246 158 230 XP_006012969.1 hsp70-binding protein 1 [Latimeria chalumnae] diamond 246 55.5 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
27881715 27881715 PRJNA384462_S_NODE_1845_length_383_cov_2.272455_g1729_i0 PRJNA384462 1845 383 2.272455 8.70350265 Metazoa 33208 Chordata Chordata 124 9.19e-34   NR MEE6466052.1 8439 g1729 i0 50.8 18.7049608355091 126 58 98.7 1 382 5 5 126 MEE6466052.1 hypothetical protein [Ascaphus truei] diamond 7164 124 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
28085787 28085787 PRJNA384462_S_NODE_3865_length_268_cov_1.283105_g3749_i0 PRJNA384462 3865 268 1.283105 3.4387214 Pseudophryne corroboree 495146 Chordata Chordata 43.9 0.0196   NR XP_063814097.1 495146 g3749 i0 30.9 0.615671641791045 55 38 61.6 0 179 15 702 756 XP_063814097.1 NACHT, LRR and PYD domains-containing protein 3-like [Pseudophryne corroboree] diamond 165 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Myobatrachidae Pseudophryne Pseudophryne corroboree
28528108 28528108 PRJNA384462_S_NODE_427_length_726_cov_5.413589_g350_i0 PRJNA384462 427 726 5.413589 39.30265614 Myotis brandtii 109478 Chordata Chordata 184 6.029999999999999e-52   NR XP_014396042.1 109478 g350 i0 43 30.1074380165289 214 88 88.4 3 17 658 187 366 XP_014396042.1 PREDICTED: ornithine decarboxylase isoform X2 [Myotis brandtii] diamond 21858 184 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis brandtii
28843487 28843487 PRJNA384462_S_NODE_3668_length_274_cov_1.675556_g3552_i0 PRJNA384462 3668 274 1.675556 4.59102344 Phallusia mammillata 59560 Chordata Chordata 144 1.27e-39   NR CAB3234495.1 59560 g3552 i0 67 4.89416058394161 91 30 99.6 0 274 2 250 340 CAB3234495.1 pro-cathepsin H-like [Phallusia mammillata] diamond 1341 144 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
28891929 28891929 PRJNA384462_S_NODE_5688_length_227_cov_2.859551_g5572_i0 PRJNA384462 5688 227 2.859551 6.49118077 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 92 3.1200000000000004e-21   NR OXB70686.1 9014 g5572 i0 82.4 5.3920704845815 51 9 67.4 0 227 75 138 188 OXB70686.1 hypothetical protein H355_015276 [Colinus virginianus] diamond 1224 92 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Odontophoridae Colinus Colinus virginianus
29050104 29050104 PRJNA384462_S_NODE_4188_length_259_cov_1.666667_g4072_i0 PRJNA384462 4188 259 1.666667 4.31666753 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 100 2.2700000000000003e-22   NR XP_043924742.1 7888 g4072 i0 51.2 24.6833976833977 82 40 95 0 14 259 1625 1706 XP_043924742.1 E3 ubiquitin-protein ligase SHPRH [Protopterus annectens] diamond 6393 100 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
29176477 29176477 PRJNA384462_S_NODE_1549_length_419_cov_4.327027_g1433_i0 PRJNA384462 1549 419 4.327027 18.13024313 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 82.4 3.01e-15   NR XP_032817537.1 7757 g1433 i0 57.6 11.1622911694511 59 25 42.2 0 2 178 349 407 XP_032817537.1 antizyme inhibitor 2-like [Petromyzon marinus] diamond 4677 82.4 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
29222730 29222730 PRJNA384462_S_NODE_1609_length_411_cov_9.406077_g1493_i0 PRJNA384462 1609 411 9.406077 38.65897647 Anas acuta 28680 Chordata Chordata 166 1.24e-48   NR XP_068541906.1 28680 g1493 i0 76.2 5.91240875912409 101 24 73.7 0 387 85 144 244 XP_068541906.1 uncharacterized protein [Anas acuta] diamond 2430 166 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas acuta
29270816 29270816 PRJNA384462_S_NODE_4009_length_264_cov_1.906977_g3893_i0 PRJNA384462 4009 264 1.906977 5.03441928 Chordata 7711 Chordata Chordata 57 4.51e-7   NR XP_018425697.1 125878 g3893 i0 45.9 2.77272727272727 61 29 67 2 236 60 508 566 XP_018425697.1 PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein EWS [Nanorana parkeri] diamond 732 57 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dicroglossidae Nanorana Nanorana parkeri
29411895 29411895 PRJNA384462_S_NODE_3089_length_296_cov_1.388664_g2973_i0 PRJNA384462 3089 296 1.388664 4.11044544 Clavelina lepadiformis 159417 Chordata Chordata 75.1 3e-13   NR CAK8696004.1 159417 g2973 i0 46.2 0.790540540540541 78 32 76 4 36 260 189 259 CAK8696004.1 unnamed protein product [Clavelina lepadiformis] diamond 234 75.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
29917347 29917347 PRJNA384462_S_NODE_2651_length_319_cov_1.511111_g2535_i0 PRJNA384462 2651 319 1.511111 4.82044409 Branchiostoma floridae 7739 Chordata Chordata 76.3 1.49e-13   NR XP_035658943.1 7739 g2535 i0 44.7 3.52664576802508 76 42 71.5 0 1 228 408 483 XP_035658943.1 serine incorporator 1-like isoform X2 [Branchiostoma floridae] diamond 1125 76.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
30043499 30043499 PRJNA384462_S_NODE_11831_length_172_cov_4.430894_g11715_i0 PRJNA384462 11831 172 4.430894 7.62113768 Pleurodeles waltl 8319 Chordata Chordata 46.2 6.97e-4   NR KAJ1185330.1 8319 g11715 i0 49 0.88953488372093 51 21 80.2 1 33 170 44 94 KAJ1185330.1 hypothetical protein NDU88_002123 [Pleurodeles waltl] diamond 153 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
30313765 30313765 PRJNA384462_S_NODE_912_length_536_cov_1.757700_g800_i0 PRJNA384462 912 536 1.7577 9.421272 Metazoa 33208 Chordata Chordata 155 4.23e-40   NR CAH1258444.1 7740 g800 i0 56.3 5.61940298507463 126 53 69.4 1 535 164 1227 1352 CAH1258444.1 DTX3L [Branchiostoma lanceolatum] diamond 3012 156 0.993589743589744 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
30534361 30534361 PRJNA384462_S_NODE_6553_length_215_cov_2.120482_g6437_i0 PRJNA384462 6553 215 2.120482 4.5590363 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 42.4 0.0345   NR CAB3267611.1 59560 g6437 i0 48.6 2.5953488372093 37 19 51.6 0 198 88 306 342 CAB3267611.1 villin-1-like [Phallusia mammillata] diamond 558 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
30770421 30770421 PRJNA384462_S_NODE_8514_length_195_cov_1.568493_g8398_i0 PRJNA384462 8514 195 1.568493 3.05856135 Brachypteracias leptosomus 135165 Chordata Chordata 71.6 1.26e-12   NR NXS59995.1 135165 g8398 i0 64.6 2.21538461538462 48 17 73.8 0 8 151 780 827 NXS59995.1 VILI protein [Brachypteracias leptosomus] diamond 432 71.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Coraciiformes Brachypteraciidae Brachypteracias Brachypteracias leptosomus
31023066 31023066 PRJNA384462_S_NODE_8895_length_192_cov_1.069930_g8779_i0 PRJNA384462 8895 192 1.06993 2.0542656 Mobula hypostoma 723540 Chordata Chordata 57 1.71e-7   NR XP_062925636.1 723540 g8779 i0 52.4 1.96875 63 21 98.4 1 3 191 261 314 XP_062925636.1 ornithine decarboxylase-like [Mobula hypostoma] diamond 378 57 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Myliobatidae Mobula Mobula hypostoma
31212179 31212179 PRJNA384462_S_NODE_13335_length_166_cov_0.871795_g13219_i0 PRJNA384462 13335 166 0.871795 1.4471797 Erpetoichthys calabaricus 27687 Chordata Chordata 43.9 0.00506   NR XP_051780182.1 27687 g13219 i0 48.8 0.740963855421687 41 21 74.1 0 152 30 769 809 XP_051780182.1 CCAAT/enhancer-binding protein zeta [Erpetoichthys calabaricus] diamond 123 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
31781782 31781782 PRJNA384462_S_NODE_3697_length_273_cov_1.093750_g3581_i0 PRJNA384462 3697 273 1.09375 2.9859375 Staurois parvus 386267 Chordata Chordata 50.8 4.54e-5   NR CAI9550647.1 386267 g3581 i0 51.1 1.65934065934066 47 18 46.2 2 263 138 159 205 CAI9550647.1 unnamed protein product [Staurois parvus] diamond 453 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
31893737 31893737 PRJNA384462_S_NODE_9957_length_184_cov_1.125926_g9841_i0 PRJNA384462 9957 184 1.125926 2.07170384 Opisthokonta 33154 Chordata Chordata 48.9 1.13e-4   NR PIO35190.1 8400 g9841 i0 50 5.73913043478261 48 22 78.3 1 180 37 336 381 PIO35190.1 hypothetical protein AB205_0203390 [Aquarana catesbeiana] diamond 1056 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Aquarana Aquarana catesbeiana
31925329 31925329 PRJNA384462_S_NODE_10537_length_180_cov_1.221374_g10421_i0 PRJNA384462 10537 180 1.221374 2.1984732 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 90.9 2.76e-20   NR XP_006887407.1 28737 g10421 i0 90.2 72.95 51 5 85 0 2 154 231 281 XP_006887407.1 PREDICTED: phosphoglycerate kinase-like [Elephantulus edwardii] diamond 13131 91.3 0.995618838992333 Eukaryota Opisthokonta Metazoa Chordata Mammalia Macroscelidea Macroscelididae Elephantulus Elephantulus edwardii
32336922 32336922 PRJNA384462_S_NODE_11879_length_172_cov_1.658537_g11763_i0 PRJNA384462 11879 172 1.658537 2.85268364 Artiodactyla 91561 Chordata Chordata 114 8.23e-28   NR KAJ8789335.1 9764 g11763 i0 96.5 5.96511627906977 57 2 99.4 0 171 1 69 125 KAJ8789335.1 hypothetical protein J1605_021862 [Eschrichtius robustus] diamond 1026 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
32824837 32824837 PRJNA384462_S_NODE_13620_length_165_cov_0.905172_g13504_i0 PRJNA384462 13620 165 0.905172 1.4935338 Anas platyrhynchos 8839 Chordata Chordata 42.4 0.018   NR EOB01333.1 8839 g13504 i0 47.6 0.763636363636364 42 21 76.4 1 165 40 177 217 EOB01333.1 hypothetical protein Anapl_16135 [Anas platyrhynchos] diamond 126 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;