RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA383995" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA383995 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26758538 26758538 PRJNA383995_P_NODE_11061_length_197_cov_1.722973_g10962_i0 PRJNA383995 11061 197 1.722973 3.39425681 Chitinophagaceae bacterium 1869212 Bacteria Bacteria 43.1 0.0137   NR RYG34286.1 1869212 g10962 i0 40 0.761421319796954 50 29 76.1 1 170 21 131 179 RYG34286.1 MAG: RNA methyltransferase [Chitinophagaceae bacterium] diamond 150 43.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
27296417 27296417 PRJNA383995_P_NODE_18163_length_162_cov_0.902655_g18064_i0 PRJNA383995 18163 162 0.902655 1.4623011 Odoribacter sp. 1965233 Bacteria Bacteria 41.2 0.0457   NR MEI3155254.1 1965233 g18064 i0 51.3 0.722222222222222 39 18 72.2 1 40 156 283 320 MEI3155254.1 tetratricopeptide repeat protein [Odoribacter sp.] diamond 117 41.2 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Odoribacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;