RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA382558" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA382558 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9332953 9332953 PRJNA382558_S_NODE_1908_length_273_cov_4.792373_g1904_i0 PRJNA382558 1908 273 4.792373 13.08317829 Opitutales bacterium ASA1 3081749 Bacteria Bacteria 125 4.38e-31   NR BET68388.1 3081749 g1904 i0 69.3 0.967032967032967 88 27 96.7 0 8 271 127 214 BET68388.1 hypothetical protein ASA1KI_33060 [Opitutales bacterium ASA1] diamond 264 125 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Alterococcaceae Congregicoccus Congregicoccus parvus
26758529 26758529 PRJNA382558_S_NODE_2901_length_244_cov_16.135266_g2897_i0 PRJNA382558 2901 244 16.135266 39.37004904 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 41.6 0.0133   NR MDE0837282.1 2562705 g2897 i0 100 0.233606557377049 19 0 23.4 0 59 3 1 19 MDE0837282.1 ribbon-helix-helix protein, CopG family [Akkermansiaceae bacterium] diamond 57 41.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
28496472 28496472 PRJNA382558_S_NODE_9487_length_175_cov_9.478261_g9483_i0 PRJNA382558 9487 175 9.478261 16.58695675 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 115 4.81e-28   NR MCX6972604.1 2026799 g9483 i0 91.2 0.977142857142857 57 5 97.7 0 3 173 441 497 MCX6972604.1 DEAD/DEAH box helicase family protein [Verrucomicrobiota bacterium] diamond 171 115 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28780332 28780332 PRJNA382558_S_NODE_2747_length_248_cov_7.691943_g2743_i0 PRJNA382558 2747 248 7.691943 19.07601864 Opitutaceae bacterium 2006848 Bacteria Bacteria 124 2.98e-32   NR HRE08112.1 2006848 g2743 i0 73.1 2.92741935483871 78 21 94.4 0 236 3 27 104 HRE08112.1 MBL fold metallo-hydrolase [Opitutaceae bacterium] diamond 726 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
30012109 30012109 PRJNA382558_S_NODE_2191_length_263_cov_7.194690_g2187_i0 PRJNA382558 2191 263 7.19469 18.9220347 Geminisphaera colitermitum 1148786 Bacteria Bacteria 44.7 0.01   NR WP_043584250.1 1148786 g2187 i0 32.8 0.730038022813688 64 42 73 1 220 29 534 596 WP_043584250.1 glycosyl hydrolase family 65 protein [Geminisphaera colitermitum] diamond 192 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Geminisphaera Geminisphaera colitermitum
30265046 30265046 PRJNA382558_S_NODE_5712_length_204_cov_4.958084_g5708_i0 PRJNA382558 5712 204 4.958084 10.11449136 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 54.3 1.94e-6   NR HEX8313057.1 2811408 g5708 i0 46.3 0.985294117647059 67 35 98.5 1 4 204 317 382 HEX8313057.1 hypothetical protein [Chthoniobacteraceae bacterium] diamond 201 54.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
31261179 31261179 PRJNA382558_S_NODE_11895_length_164_cov_5.110236_g11891_i0 PRJNA382558 11895 164 5.1102359999999996 8.38078704 Pseudomonadati 3379134 Bacteria Bacteria 42.7 0.0116   NR MBL9159496.1 2026801 g11891 i0 48 3.8780487804878 50 25 89.6 1 162 16 85 134 MBL9159496.1 response regulator transcription factor [Verrucomicrobiales bacterium] diamond 636 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
31971680 31971680 PRJNA382558_S_NODE_6118_length_199_cov_11.092593_g6114_i0 PRJNA382558 6118 199 11.092593 22.07426007 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42 0.0374   NR MBV8481670.1 2026799 g6114 i0 44.2 1.5678391959799 52 29 78.4 0 198 43 6 57 MBV8481670.1 ChaN family lipoprotein [Verrucomicrobiota bacterium] diamond 312 42 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;