RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA382558" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA382558 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31514446 31514446 PRJNA382558_S_NODE_10396_length_171_cov_4.395522_g10392_i0 PRJNA382558 10396 171 4.395522 7.51634262 root 1 Root_unresolved Root_unresolved 55.8 3.31e-7   NR GEU28503.1 118510 g10392 i0 58 1.80701754385965 50 20 86 1 166 20 1056 1105 GEU28503.1 hypothetical protein [Tanacetum cinerariifolium] diamond 309 55.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Tanacetum Tanacetum cinerariifolium
32793037 32793037 PRJNA382558_S_NODE_3520_length_232_cov_8.184615_g3516_i0 PRJNA382558 3520 232 8.184615 18.9883068 Triticum aestivum 4565 Plants Plants 42.4 0.0419   NR KAF7031199.1 4565 g3516 i0 44 0.646551724137931 50 28 64.7 0 15 164 119 168 KAF7031199.1 hypothetical protein CFC21_042570 [Triticum aestivum] diamond 150 42.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;