RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA382357" and tax_kingdom = "Bamfordvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bamfordvirae · 2 ✖

bioproject 1

  • PRJNA382357 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27423006 27423006 PRJNA382357_P_NODE_83863_length_261_cov_13.070000_g83124_i0 PRJNA382357 83863 261 13.07 34.1127 Yellowstone lake phycodnavirus 3 1586715 Viruses Viruses 68.2 4.65e-11   NR YP_009174377.1 1586715 g83124 i0 53.1 0.735632183908046 64 30 73.6 0 256 65 235 298 YP_009174377.1 putative major capsid protein [Yellowstone lake phycodnavirus 3] diamond 192 68.2 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Algavirales Phycodnaviridae Prasinovirus Yellowstone lake phycodnavirus 3
28369928 28369928 PRJNA382357_P_NODE_69206_length_284_cov_5.829596_g68467_i0 PRJNA382357 69206 284 5.8295959999999996 16.55605264 Yellowstone lake phycodnavirus 3 1586715 Viruses Viruses 45.1 0.00105   NR YP_009174247.1 1586715 g68467 i0 52 0.528169014084507 50 14 45.4 2 172 44 1 47 YP_009174247.1 hypothetical protein AR677_gp030 [Yellowstone lake phycodnavirus 3] diamond 150 45.1 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Algavirales Phycodnaviridae Prasinovirus Yellowstone lake phycodnavirus 3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;