RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA382357" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA382357 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13158322 13158322 PRJNA382357_P_NODE_87851_length_256_cov_1.994872_g87112_i0 PRJNA382357 87851 256 1.994872 5.10687232 Pseudomonadati 3379134 Bacteria Bacteria 112 1.89e-26   NR OGP85363.1 1797835 g87112 i0 81.3 11.33203125 64 12 75 0 193 2 35 98 OGP85363.1 MAG: two-component system sensor histidine kinase KdbD, partial [Deltaproteobacteria bacterium RBG_13_65_10] diamond 2901 113 0.991150442477876 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_65_10
28418705 28418705 PRJNA382357_P_NODE_156386_length_201_cov_52.557143_g155647_i0 PRJNA382357 156386 201 52.557143 105.63985743 Myxococcota 2818505 Bacteria Bacteria 80.9 7.72e-16   NR OLC78207.1 1805121 g155647 i0 92.9 17.6417910447761 42 3 62.7 0 175 50 717 758 OLC78207.1 MAG: multidrug efflux protein [Deltaproteobacteria bacterium 13_1_40CM_4_68_19] diamond 3546 81.6 0.991421568627451 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium 13_1_40CM_4_68_19

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;