RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA382357" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA382357 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18926882 18926882 PRJNA382357_P_NODE_69255_length_284_cov_3.493274_g68516_i0 PRJNA382357 69255 284 3.493274 9.92089816 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 113 1.51e-27   NR NP_044782.1 48483 g68516 i0 74.6 5.15492957746479 71 18 75 0 35 247 119 189 NP_044782.1 NADH dehydrogenase subunit 7 [Reclinomonas americana] diamond 1464 114 0.991228070175439 Eukaryota Discoba       Jakobida Histionidae Reclinomonas Reclinomonas americana
27612255 27612255 PRJNA382357_P_NODE_119244_length_224_cov_1.036810_g118505_i0 PRJNA382357 119244 224 1.03681 2.3224544 Bodo saltans 75058 Euglenozoa other_Eukaryota 46.6 0.00127   NR CUG86635.1 75058 g118505 i0 37.1 0.9375 70 36 93.8 1 216 7 399 460 CUG86635.1 heat shock protein 70, putative [Bodo saltans] diamond 210 46.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
30233004 30233004 PRJNA382357_P_NODE_130012_length_214_cov_2.483660_g129273_i0 PRJNA382357 130012 214 2.48366 5.3150324 Leishmania tarentolae 5689 Euglenozoa other_Eukaryota 42 0.0493   NR GET92619.1 5689 g129273 i0 32.7 0.728971962616822 52 33 70.1 1 62 211 50 101 GET92619.1 oligosaccharyl transferase-like protein [Leishmania tarentolae] diamond 156 42 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania tarentolae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;