RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA380660" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA380660 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26663216 26663216 PRJNA380660_P_NODE_5821_length_320_cov_1.989691_g5422_i0 PRJNA380660 5821 320 1.989691 6.3670112 Porospora cf. gigantea B 2853592 SAR_Eukaryotes SAR_Eukaryotes 60.8 4.06e-8   NR XP_068376260.1 2853592 g5422 i0 32.4 8.2875 102 62 89.1 2 319 35 718 819 XP_068376260.1 MAG: uncharacterized protein KVP17_002002 [Porospora cf. gigantea B] diamond 2652 61.2 0.993464052287582 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Porosporidae Porospora Porospora cf. gigantea B
29050063 29050063 PRJNA380660_P_NODE_8288_length_241_cov_1.924528_g7888_i0 PRJNA380660 8288 241 1.924528 4.63811248 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 94 9.62e-22   NR KAK1938745.1 32595 g7888 i0 57 6.92116182572614 79 34 98.3 0 3 239 108 186 KAK1938745.1 hypothetical protein X943_004033 [Babesia divergens] diamond 1668 94.7 0.992608236536431 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia divergens
29980253 29980253 PRJNA380660_P_NODE_3971_length_409_cov_2.539474_g3578_i0 PRJNA380660 3971 409 2.539474 10.38644866 Neospora caninum Liverpool 572307 SAR_Eukaryotes SAR_Eukaryotes 61.2 7.71e-8   NR XP_003885333.1 572307 g3578 i0 42.1 0.784841075794621 107 55 76.3 4 94 405 303 405 XP_003885333.1 Peptidylprolyl isomerase D (Cyclophilin D),related [Neospora caninum Liverpool] diamond 321 61.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;